--- title: 'Open Source Software / Library' taxonomy: category: - docs external_links: process: true no_follow: true target: _blank mode: active --- [toc] ## Overview{#about} We provide well-known packages and libraries except those in the Linux distributions. We also distribute software sources and environments of Configure and Make to provide the know-how of how to make various packages. If you have any suggestions or comments, please feel free to contact to our programming support desk. Please also tell us if you require software that is not listed below. Their usage conditions are in accordance with individual software conditions. For more information about using the Migrated Software, please refer to the manual of each software. Key: \+ = Available for all users. ― = Not available for use. ## ABINIT{#abinit} #### Distribution Website [ABINIT](https://www.abinit.org/) #### module file version | Module File | SystemA | SystemB,C ---------------------- | ------------------- | ----- | ----- 8.10.1 | abinit/8.10.1_intel-17.0 | + | ― 8.10.1 | abinit/8.10.1_intel-17.0-impi-2017.4 | ― | + 8.6.3 | abinit/8.6.3_intel-17.0 | + | ― 8.6.3 | abinit/8.6.3_intel-17.0-impi-2017.2 | ― | + #### Install Directory ```nohighlight /opt/app/abinit ``` ## ABINIT-MP{#abinit-mp} #### Distribution Website [RSS21](http://www.ciss.iis.u-tokyo.ac.jp/rss21/index.html) #### module file Please contact us if you want to use this software. <!-- version | Module File | SystemA | SystemB,C -------------------------- | ----------------------- | ----- | ----- 15.1 | abinit-mp/15.1_intel-18.0 | + | ― 4.1 | abinit-mp/4.1_cray-8.5 | + | ― 4.1 | abinit-mp/4.1_intel-16.0 | + | + #### Install Directory ```nohighlight /opt/app/abinit-mp ``` --> #### Note Please make sure to acknowledge the use of this software in papers when publishing research achievements obtained from the use of this software. ```nohighlight “Electron-correlated fragment-molecular-orbital calculations for biomolecular and nano systems”, S. Tanaka, Y. Mochizuki, Y. Komeiji, Y. Okiyama, K. Fukuzawa, Phys. Chem. Chem. Phys. 16 (2014) 10310-10344. ``` <!-- Those who want to use this software must make a contract with the author of this software directly. --> ## Anaconda{#anaconda} #### Distribution Website [Anaconda](https://www.anaconda.com/download/) #### module file anaconda version | python version | Module File | SystemA | SystemB,C ---------------------- | ------------------- | ----- | ----- 2/4.2.0 | 2.7.12 | anaconda2/4.2.0 | + | + 2/5.1.0 | 2.7.14 | anaconda2/5.1.0 | + | + 2/5.1.0-intel | 2.7.14 | anaconda2/5.1.0-intel | + | + 3/4.2.0 | 3.5.2 | anaconda3/4.2.0 | + | + 3/5.0.1 | 3.6.3 | anaconda3/5.0.1 | + | + 3/5.0.1-intel | 3.6.2 | anaconda3/5.0.1-intel | + | + 3/5.1.0 | 3.6.4 | anaconda3/5.1.0 | + | + 3/5.1.0-intel | 3.6.3 | anaconda3/5.1.0-intel | + | + 3/5.3.1 | 3.6.7 | anaconda3/5.3.1 | + | + 3/2019.10 | 3.7.4 | anaconda3/2019.10 | + | + 3/2020.11 | 3.8.5 | anaconda3/2020.11 | + | + #### Install Directory ```nohighlight /opt/app/anaconda2 /opt/app/anaconda3 ``` #### Notice TensorFlow is available, which is installed as a plugin. ## ARPACK{#arpack} #### Distribution Website [ARPACK - Arnoldi Package](http://www.caam.rice.edu/software/ARPACK/) #### module file version | Module File | SystemA | SystemB,C ---------------------- | ------------------- | ----- | ----- 96 | arpack/96_cray-8.5 | + | + " | arpack/96_intel-16.0 | + | + " | arpack/96_gnu-6.1 | + | ― #### Install Directory ```nohighlight /opt/app/arpack ``` ## BoltzTrap{#boltztrap} #### Distribution Website [BoltzTraP](https://www.imc.tuwien.ac.at//forschungsbereich_theoretische_chemie/forschungsgruppen/prof_dr_gkh_madsen_theoretical_materials_chemistry/boltztrap/) #### Module File version | Module File | SystemA | SystemB,C ---------------------- | ------------------- | ----- | ----- 1.2.5 | boltztrap/1.2.5_intel-17.0-impi-2017.4 | ― | + #### Install Directory ```nohighlight /opt/app/boltztrap ``` ## BoltzTrap2{#boltztrap2} #### Distribution Website [BoltzTraP2](https://www.imc.tuwien.ac.at/index.php?id=21094) #### Module File version | Module File | SystemA | SystemB,C ---------------------- | ------------------- | ----- | ----- 18.5.1 | boltztrap2/18.5.1_gnu-7.1-cray-python-17.06.1 | + | ― 18.5.1 | boltztrap2/18.5.1_intel-17.0-intel-python-3.5.3 | ― | + #### Install Directory ```nohighlight /opt/app/boltztrap2 ``` #### Notes This software is a site package of Python. This module loads [cray python 17.06.1](#craypython) on system A, or [intel disribution python 3.5.3](#intelpython) on system B/C at the same time. ## CMAKE{#cmake} #### Distribution Website [CMAKE](https://kitware.com/cmake) ##### Module File version | Module File | SystemA | SystemB,C ---------------------- | ------------------- | ----- | ----- 3.13.2 | cmake/3.13.2 | ― | + 3.7.1 | cmake/3.7.1 | ― | + #### Install Directory ```nohighlight /opt/app/cmake ``` #### Notes In System A, CMAKE 3.5.2 is available, no module needed. ## CP2K{#cp2k} #### Distribution Website [CP2K](https://www.cp2k.org/about) #### moduleファイル version | Module File | SystemA | SystemB,C ----- | -------- | ------ | ------- 8.1 | cp2k/8.1.0_gnu-8.1.0-impi-2018.4 | - | + 8.1 | cp2k/8.1.0_intel-18.0.5-impi-2018.4 | - | + #### Install Directory ```nohighlight /opt/app/cp2k ``` ## Cray Python{#craypython} #### module file * python2 Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 2.7.15.6 | cray-python/2.7.15.6 | + | ― 2.7.15.3 | cray-python/2.7.15.3 | + | ― 2.7.13.1 | cray-python/2.7.13.1 | + | ― * python3 Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 3.6.5.6 | cray-python/3.6.5.6 | + | ― 3.6.5.3 | cray-python/3.6.5.3 | + | ― 3.6.1.1 | cray-python/3.6.1.1 | + | ― * both python 2 and 3 (obsolete) Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 17.06.1 | cray-python/17.06.1 | + | ― 17.09.1 | cray-python/17.09.1 | + | ― #### Install Directory ```nohighlight /opt/python ``` ## Cray R{#crayr} #### module file Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 3.4.2 | cray-R/3.4.2 | + | ― 3.3.3 | cray-R/3.3.3 | + | ― #### Install Directory ```nohighlight /opt/R ``` <!-- ## Emacs{#emacs} #### Distribution Website [GNU Emacs](http://www.gnu.org/software/emacs/emacs.html) #### Usage ```nohighlight $ emacs ``` #### module file version | Module File | SystemA | SystemB,C --------------- | ------------ | ----- | ----- xxx | emacs/xxx | + | + #### Install Directory ```nohighlight /usr/bin/emacs ``` --> ## FDS {#fds} #### Distribution Website [FDS](https://github.com/firemodels/fds/releases) #### Module File Version | Module File | SystemA | SystemB,C -------------------------- | ----------------------- | ----- | ----- 6.7.1 | fds/6.7.1-18.0-impi-2018.4 | ― | + 6.5.3 | fds/6.5.3-18.0-impi-2018.4 | ― | + #### Install Directory ```nohighlight /opt/app/fds ``` ## FFTE{#ffte} #### Distribution Website [FFTE: A Fast Fourier Transform Package](http://www.ffte.jp/) #### module file Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 6.0 | ffte/6.0_cray-8.5 | + | ― 6.0 | ffte/6.0_intel-17.0-impi-2017.2 | ― | + #### Install Directory ```nohighlight /opt/app/ffte ``` ## FFTW2{#fftw2} #### Distribution Website [FFTW Home Page](http://www.fftw.org/) #### module file version | Module File | SystemA | SystemB,C --------- | -------------- | ----- | ----- 2.1.5.9 | fftw/2.1.5.9 | + | ― ## FFTW3{#fftw3} #### Distribution Website [FFTW Home Page](http://www.fftw.org/) #### module file * 64bit precision version | Module File | SystemA | SystemB,C ---------------------- | ----------------------- | ----- | ----- 3.3.8.3 | cray-fftw/3.3.8.3 | + | ― 3.3.8.2 | cray-fftw/3.3.8.2 | + | ― 3.3.8.1 | cray-fftw/3.3.8.1 | + | ― 3.3.6.3 | cray-fftw/3.3.6.3 | + | ― 3.3.6.2 | cray-fftw/3.3.6.2 | + | ― 3.3.5 | fftw/3.3.5_intel-17.0-impi-2017.1 | ― | + 3.3.4.11 | fftw/3.3.4.11 | + | ― 3.3.4.10 | fftw/3.3.4.10 | + | ― 3.3.4.9 | fftw/3.3.4.9 | + | ― 3.3.4.7 | fftw/3.3.4.7 | + | ― 3.3.4 | fftw/3.3.4_intel-17.0-impi-2017.1 | ― | + * 80bit precision version | Module File | SystemA | SystemB,C ---------------------- | ----------------------- | ----- | ----- 3.3.4 | fftwl/3.3.4_intel-17.0<br>fftwl/3.3.4_gnu-6.3 | + | ― #### Install Directory System A ```nohighlight /opt/cray/pe/fftw ``` System B,C ```nohighlight /opt/app/fftw ``` <!-- ## freeglut{#freeglut} #### Distribution Website [The freeglut Project](http://freeglut.sourceforge.net/) #### module file version | Module File | SystemA | SystemB,C ------- | --------------------------- | ----- | ----- (in preparation) | freeglut/xxx | ― | + #### Install Directory ```nohighlight /opt/app/freeglut ``` --> ## FrontFlow/blue{#frontflow_blue} #### Distribution Website [RSS21](http://www.ciss.iis.u-tokyo.ac.jp/rss21/index.html) #### module file Please contact us if you want to use this software. version | Module File | SystemA | SystemB,C -------------------------------- | ----------------------------- | ----- | ----- 8.1 | frontflow_blue/8.1_intel-18.0 | + | ― #### Install Directory ```nohighlight /opt/app/frontflow_blue ``` #### Note **Those who want to use this software must observe the following conditions. (write acknowledgments in your paper, etc.)** [http://www.ciss.iis.u-tokyo.ac.jp/dl/download/permission.php?group_id=7](http://www.ciss.iis.u-tokyo.ac.jp/dl/download/permission.php?group_id=7) ## FrontFlow/red{#frontflow_red} #### Distribution Website [RSS21](http://www.ciss.iis.u-tokyo.ac.jp/rss21/index.html) #### module file Please contact us if you want to use this software. <!-- version | Module File | SystemA | SystemB,C -------------------------------- | ----------------------------- | ----- | ----- 3.0.1 | frontflow_red/3.0.1_intel-16.0 | + | + #### Install Directory ```nohighlight /opt/app/frontflow_red ``` --> #### Note **Those who want to use this software must observe the following conditions. (write acknowledgments in your paper, etc.)** [http://www.ciss.iis.u-tokyo.ac.jp/dl/download/permission.php?group_id=7](http://www.ciss.iis.u-tokyo.ac.jp/dl/download/permission.php?group_id=7) ## FrontISTR{#frontistr} #### Distribution Website [FrontISTR](https://www.frontistr.com/) #### module file vesion | Module File | Sydtem A | SystemB,C -------------------------------- | ----------------------------- | --------- | -------- 5.1.1 | frontistr/5.1.1_intel-18.0 | + | ― 5.0b | frontistr/5.0b_intel-18.0 | + | ― #### Install Directory ```nohighlight /opt/app/frontistr ``` ## GAMESS{#gamess} #### Distribution Website [Gordon Group / GAMESS Homepage](http://www.msg.ameslab.gov/GAMESS/) #### module file version | Module File | SystemA | SystemB,C ------------------------------------- | ----------------------------------------- | ----- | ----- 2016_r1 | gamess/2016R1_intel-17.0-impi-2017.1 | ― | + 2014_r1 | gamess/2014R1_cray-8.5 <br>gamess/2014R1_intel-16.0 | + | ― 2014_r1 | gamess/2014R1_intel-16.0-impi-5.1 | ― | + #### Install Directory ```nohighlight /opt/app/gamess ``` ## GDAL{#gdal} #### Distribution Website [GDAL](https://gdal.org/) #### module file version | Module File | SystemA | SystemB,C -------------------------------------- | ----------------------------------------- | ----- | ----- 3.0.3 | gdal/3.0.3_gnu-8.1 | ― | + 2.4.4 | gdal/2.4.4_gnu-8.1 | ― | + #### Install Directory ```nohighlight /opt/app/gdal ``` ## GENESIS{#genesis} #### Distribusion Website [GENESIS](https://www.r-ccs.riken.jp/labs/cbrt/) #### module file version | モジュールファイル名 | システムA | システムB,C ---------------------------------- | --------------------------------- | -------- | ----- 1.5.1 | genesis/1.5.1_intel-18.0 | + | ― 1.3.0 | genesis/1.3.0_intel-18.0 | + | ― #### Install Directory ```nohighlight /opt/app/genesis ``` ## Git{#git} #### Distribution Website [Git](http://git-scm.com/) #### Usage ```nohighlight $ git ``` #### module file version | Module File | SystemA | SystemB,C --------- | ------------- | ----- | ----- 2.27 | git/2.27_gnu-4.8 | ― | + #### Install Directory ```nohighlight /opt/app/git ``` #### Notes In system A, you can use a recent git by default, don't need to load a module. ## GMT{#gmt} #### Distribution Website [The GMT Home Page](http://www.soest.hawaii.edu/gmt/) #### module file version | Module File | SystemA | SystemB,C ---------------------- | ---------------------- | ----- | ----- 5.4.1 | gmt5/5.4.1_intel-17.0 | + | ― 5.4.1 | gmt5/5.4.1_intel-17.0-impi-2017.2 | ― | + 4.5.13 | gmt4/4.5.13_gnu-5.3 | + | ― #### Install Directory ```nohighlight /opt/app/gmt ``` #### Notes On system A, when you use GMT by batch job, please add -q option to aprun command in the job script. Example: ```nohighlight #!/bin/bash #QSUB -q gr19999a #QSUB -ug gr19999 #QSUB -A p=1:t=1:c=1:m=1355M aprun -q -n $QSUB_PROCS -d $QSUB_THREADS -N $QSUB_PPN gmt psbasemap -R0/6.5/0/7.5 -Jx1i -B0 -P -K > out.ps ``` ## Gnuplot{#gnuplot} #### Distribution Website [gnuplot homepage](http://www.gnuplot.info/) #### module file version | Module File | SystemA | SystemB,C ---------------- | --------------- | ----- | ----- 5.0.4 | gnuplot/5.0.4 | + | + #### Install Directory ```nohighlight /opt/app/gnuplot ``` ## Grace{#grace} #### Distribution Website [Grace](http://plasma-gate.weizmann.ac.il/Grace/) #### module file Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 5.1.25 | grace/5.1.25_gnu-4.8 | ― | + #### Install Directory ```nohighlight /opt/app/grace ``` ## GrADS{#grads} #### Distribution Website [GrADS Home Page](http://www.iges.org/grads/) #### module file version | Module File | SystemA | SystemB,C ------- | ------------- | ----- | ----- 2.2.0 | grads/2.2.0_intel-18.0-impi-2018.0 | ― | + 2.2.0 | grads/2.2.0 | + | ― 2.0.2 | grads/2.0.2_intel-17.0-impi-2017.2 | ― | + 2.0.2 | grads/2.0.2_gnu-5.3 | + | ― #### Install Directory ```nohighlight /opt/app/grads ``` ## gromacs{#gromacs} #### Distribution Website [Gromacs](http://www.gromacs.org/) #### module file version | Module File | SystemA | SystemB,C ---------------------------- | -------------------------- | ----- | ----- 2016.4 | gromacs/2016.4_intel-17.0-impi-2017.2 | ― | + 2016.4 | gromacs/2016.4_intel-17.0 | + | ― #### Install Directory ```nohighlight /opt/app/gromacs ``` ## HDF4{#hdf4} #### Distribution Website [HDF Group](http://www.hdfgroup.org) #### module file Version | Module File | SystemA | SystemB,C -------------------------- | ----------------------- | ----- | ----- 4.2.13 | hdf4/4.2.13 | + | ― #### Install Directory ```nohighlight /opt/app/hdf4 ``` ## HDF5{#hdf5} #### Distribution Website [HDF Group -HDF5](http://www.hdfgroup.org/HDF5/) #### module file * single execution Version | Module File | SystemA | SystemB,C -------------------------------- | ----------------------- | ----- | ----- 1.10.5.1 | cray-hdf5/1.10.5.1 | + | ― 1.10.2.0 | cray-hdf5/1.10.2.0 | + | ― 1.10.1.1 | cray-hdf5/1.10.1.1 | + | ― 1.10.0.3 | cray-hdf5/1.10.0.3 | + | ― 1.10.0.1 | cray-hdf5/1.10.0.1 | + | ― 1.10.0 | cray-hdf5/1.10.0 | + | ― 1.10.0 | hdf5/1.10.0_intel-17.0<br>hdf5/1.10.0_gnu-4.8 | ― | + 1.8.17 | hdf5/1.8.17_intel-16.0 <br>hdf5/1.8.17_cray-8.5<br>hdf5/1.8.17_gnu-4.8 | ― | + 1.8.16 | cray-hdf5/1.8.16 | + | ― * parallel execution Version | Module File | SystemA | SystemB,C -------------------------------- | ----------------------- | ----- | ----- 1.10.5.1 parallel | cray-hdf5-parallel/1.10.5.1 | + | ― 1.10.2.0 parallel | cray-hdf5-parallel/1.10.2.0 | + | ― 1.10.1.1 parallel | cray-hdf5-parallel/1.10.1.1 | + | ― 1.10.0.3 parallel | cray-hdf5-parallel/1.10.0.3 | + | ― 1.10.0.1 parallel | cray-hdf5-parallel/1.10.0.1 | + | ― 1.10.0 parallel | cray-hdf5-parallel/1.10.0 | + | ― 1.10.0 parallel | hdf5-parallel/1.10.0_intel-17.0-impi-2017.1 | ― | + 1.8.17 parallel | hdf5-parallel/1.8.17_intel-17.0-impi-2017.1<br>hdf5-parallel/1.8.17_cray-8.5-impi-5.1 | ― | + 1.8.16 parallel | cray-hdf5-parallel/1.8.16 | + | ― #### Install Directory System A ```nohighlight /opt/cray/pe/hdf5 /opt/cray/pe/hdf5-parallel ``` System B,C ```nohighlight /opt/app/hdf5 /opt/app/hdf5-parallel ``` ## Hypre{#hypre} #### Distribution Website [HYPRE: Scalable Linear Solvers and Multigrid Methods](https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods) #### module file Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 2.14 | cray-tpsl/19.06.1 | + | ― 2.11 | cray-tpsl/18.06.1 | + | ― ― | cray-tpsl/17.11.1 | + | ― ― | cray-tpsl/16.12.1 | + | ― 2.11.1 | hypre/2.11.1_intel-17.0-impi-2017.2 | ― | + #### Install Directory System A ```nohighlight /opt/cray/pe/tpsl ``` System B,C ```nohighlight /opt/app/hypre ``` ## Hφ{#hphi} #### Distribution Website [Hφ: Quantum Lattice Model Simulator Package](http://www.pasums.issp.u-tokyo.ac.jp/hphi/) #### Module File Version | Module File | System A | System B,C ------------------------- | -------------------------------- | ----- | ----- 3.4.0 | hphi/3.4.0_intel-18.0 | + | ― 3.1.2 | hphi/3.1.2_intel-17.0 | + | ― #### Installation Directory ```nohighlight /opt/app/hphi ``` ## Intel Distribution Python{#intelpython} #### Distribution Website [Intel Distribution for Python](https://software.intel.com/en-us/distribution-for-python) #### module file version | Module File | SystemA | SystemB,C --------- | ----------- | ----- | ----- 3.5.3 | intel-python/3.5.3_2017.3 | ― | + 2.7.13 | intel-python/2.7.13_2017.3 | ― | + #### Install Directory ```nohighlight /opt/app/intel/intelpython ``` ## Julia{#julia} #### Distribution Website [The Julia Language](https://julialang.org/) #### module file Version | Module File | SystemA | SystemB,C -------------------------- | ----------------------- | ----- | ----- 1.2.0 | julia/1.2.0 | + | + 1.0.1 | julia/1.0.1 | + | + #### 注意事項 In system A, Julia is available by batch job execution. In the batch job script, execute a shell script by aprun, then execute julia in the shell script. The source code to be run by Julia must be input by redirection. * Example of job script ```nohighlight $ cat jobscript.sh #!/bin/bash #QSUB -q gr19999a #QSUB -ug gr19999 aprun -b sh source.sh ``` ```nohighlight $ cat source.sh #!/bin/bash julia < hello-world.jl ``` * Example of execution ```nohighlight $ qsub jobscript.sh ``` #### Install Directory ```nohighlight /opt/app/julia ``` ## LAMMPS{#lammps} #### Distribution Website [LAMMPS Molecular Dynamics Simulator](http://lammps.sandia.gov/) #### module file Version | Module File | SystemA | SystemB,C -------------------------- | ----------------------- | ----- | ----- 7Aug19 | lammps/7Aug19_intel-18.0 | + | + 22Aug18 | lammps/22Aug18_intel-17.0 | + | + 11Aug17 | lammps/11Aug17_intel-18.0 | + | + 17Nov16 | lammps/17Nov16_intel-17.0 | + | ― #### Install Directory ```nohighlight /opt/app/lammps ``` ## Lis{#lis} #### Distribution Website [Lis: Library of Iterative Solvers for Linear Systems](http://www.ssisc.org/lis/) #### module file Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 2.0.4 | lis/2.0.4_intel-18.0 | + | ― 2.0.4 | lis/2.0.4_intel-18.0-impi-2018.0 | ― | + 1.7.27 | lis/1.7.27_intel-17.0 <br>lis/1.7.27_cray-8.5 | + | ― 1.7.27 | lis/1.7.27_intel-17.0-impi-2017.2 | ― | + #### Install Directory ```nohighlight /opt/app/lis ``` ## Meep{#meep} #### Distribution Website [Meep-AbInitio](http://ab-initio.mit.edu/wiki/index.php/Meep) #### module file version | Module File | SystemA | SystemB,C ------------------------ | -------------------- | ----- | ----- 1.3 | meep/1.3_intel-17.0 | ― | + " | meep/1.3_intel-16.0 | + | ― " | meep/1.3_gnu-6.1 | + | ― " | meep/1.3_gnu-4.8 | ― | + #### Install Directory ```nohighlight /opt/app/meep ``` ## Meson{#meson} #### Distribution Website [Meson](http://mesonbuild.com/) #### module file Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 0.44 | meson/0.44.0 | + | ― #### Install Directory ```nohighlight /opt/app/meson ``` #### Notice When running meson on the login node of system A, the following error occurs. ```nohighlight Meson encountered an error in file meson.build, line 1, column 0: Executables created by c compiler cc are not runnable. ``` To avoid the error, please run meson on the computing node (adding tssrun before meson command, for example). ## Metis{#metis} #### Distribution Website [METIS - Serial Graph Partitioning and Fill-reducing Matrix Ordering](http://glaros.dtc.umn.edu/gkhome/metis/metis/overview) #### module file Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 5.1.0 | cray-tpsl/18.06.1 | + | ― ― | cray-tpsl/17.11.1 | + | ― ― | cray-tpsl/16.12.1 | + | ― 5.1.0 | metis/5.1.0_intel-17.0-impi-2017.2 | ― | + #### Install Directory System A ```nohighlight /opt/cray/pe/tpsl ``` System B,C ```nohighlight /opt/app/metis ``` ## Microsoft R Open{#mro} #### Distribution Website [Microsoft R Open](https://mran.microsoft.com/open/) #### module file Version | Module File | SystemA | SystemB,C -------------------------- | ----------------------- | ----- | ----- 3.3.2 | MRO/3.3.2_gnu-4.8 | ― | + #### Install Directory ```nohighlight /opt/app/mro ``` ## MODYLAS{#modylas} #### Distribution Website [MODYLAS: MOlecular DYnamics software for LArge System](https://www.modylas.org/) #### Module File Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 1.1.0b | modylas/1.1.0b_intel-18.0 | + | ― 1.0.4 | modylas/1.0.4_intel-17.0 | + | ― #### Installation Directory ```nohighlight /opt/app/modylas ``` #### Note **Observe the licence agreement.** http://www.modylas.org/system/files/MODYLAS_ReferenceManual_v1.0.2_Japanese.pdf ## MUMPS{#mumps} #### Distribution Website [MUMPS : a parallel sparse direct solver](http://mumps.enseeiht.fr/) #### module file Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 5.2.0 | cray-tpsl/19.06.1 | + | ― 5.1.1 | cray-tpsl/18.06.1 | + | ― ― | cray-tpsl/17.11.1 | + | ― ― | cray-tpsl/16.12.1 | + | ― 5.0.2 | mumps/5.0.2_intel-17.0-impi-2017.2 | ― | + #### Install Directory System A ```nohighlight /opt/cray/pe/tpsl ``` System B,C ```nohighlight /opt/app/mumps ``` ## NAMD{#namd} #### Distribution Website [NAMD](http://www.ks.uiuc.edu/Research/namd/) #### module file version | Module File | SystemA | SystemB,C ---------------------------------------------- | --------------------------------------------- | ----- | ----- 2.14 beta2 | namd/2.14b2_intel-18.0-impi-2018.4 | ― | + 2.11 | namd/2.11_intel-16.0 | + | + #### Install Directory ```nohighlight /opt/app/namd ``` ## NCAR Command Language (NCL){#ncarg} #### Distribution Website [CISL's NCAR Command Language](https://www.ncl.ucar.edu/) #### module file version | Module File | SystemA | SystemB,C ------- | ------------------ | ----- | ----- 6.4.0 | ncl/6.4.0 | ― | + #### Install Directory ```nohighlight /opt/app/ncl ``` --> <!-- in preparation ## Ncview{#ncview} #### Distribution Website [Ncview](http://meteora.ucsd.edu/~pierce/ncview_home_page.html) #### module file version | Module File | SystemA | SystemB,C ------------------------ | ------------------------ | ----- | ----- xxx | ncview/xxx | + | + #### Install Directory ```nohighlight /opt/app/ncview ``` --> ## NetCDF{#netcdf} #### Distribution Website [Unidata | NetCDF](http://www.unidata.ucar.edu/software/netcdf/) #### module file * single execution version | Module File | SystemA | SystemB,C -------------------------------- | ------------------------- | ----- | ----- 4.6.3.1 | cray-netcdf/4.6.3.1 | + | ― 4.6.1.3 | cray-netcdf/4.6.1.3 | + | ― 4.4.1.1.6 | cray-netcdf/4.4.1.1.6 | + | ― 4.4.1.1.3 | cray-netcdf/4.4.1.1.3 | + | ― 4.4.1.1 | cray-netcdf/4.4.1.1 | + | ― 4.4.1 | cray-netcdf/4.4.1 | + | ― 4.4.0 | cray-netcdf/4.4.0 | + | ― 4.4.0 | netcdf/4.4.0_intel-17.0<br>netcdf/4.4.0_gnu-4.8 | ― | + 4.1.3 | netcdf/4.1.3_intel-16.0<br>netcdf/4.1.3_cray-8.5<br>netcdf/4.1.3_gnu-4.8 | ― | + * parallel execution version | Module File | SystemA | SystemB,C -------------------------------- | ------------------------- | ----- | ----- 4.6.3.1 | cray-netcdf-hdf5parallel/4.6.3.1 | + | ― 4.6.1.3 | cray-netcdf-hdf5parallel/4.6.1.3 | + | ― 4.4.1.1.6 | cray-netcdf-hdf5parallel/4.4.1.1.6 | + | ― 4.4.1.1.3 | cray-netcdf-hdf5parallel/4.4.1.1.3 | + | ― 4.4.1.1 | cray-netcdf-hdf5parallel/4.4.1.1 | + | ― 4.4.1 | cray-netcdf-hdf5parallel/4.4.1 | + | ― 4.4.0 | cray-netcdf-hdf5parallel/4.4.0 | + | ― 4.1.3 | netcdf-parallel/4.1.3_intel-17.0<br>netcdf-parallel/4.1.3_cray-8.5 | ― | + #### Install Directory System A ```nohighlight /opt/cray/pe/netcdf /opt/cray/pe/netcdf-hdf5parallel ``` System B,C ```nohighlight /opt/app/netcdf /opt/app/netcdf-hdf5parallel ``` ## Ninja{#ninja} #### Distribution Website [Ninja](https://ninja-build.org/) #### module file Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 1.8.2 | ninja/1.8.2 | + | ― #### Install Directory ```nohighlight /opt/app/ninja ``` ## NTChem{#ntchem} #### Distribution Website [NTChem](https://www.r-ccs.riken.jp/software_center/jp/software/ntchem/overview/) #### Module File Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 2013-12.1 | ntchem/2013-12.1_intel-19.3 | ― | + 2013-11.1 | ntchem/2013-11.1_intel-18.0 | + | ― 2013-10.1 | ntchem/2013-10.1_intel-17.0 | + | ― #### Installation Directory ```nohighlight /opt/app/ntchem ``` #### Note **Observe the licence agreement.** [http://molsc.riken.jp/ntchem2013_manual.pdf](http://molsc.riken.jp/ntchem2013_manual.pdf) ## NWChem{#nwchem} #### Distribution Website [NWChem](http://www.nwchem-sw.org/) #### module file Version | Module File | SystemA | SystemB,C -------------------------- | ----------------------- | ----- | ----- 6.6 | nwchem/6.6_intel-17.0 | + | ― 6.5 | nwchem/6.5_intel-17.0-impi-2017.1 | ― | + #### Install Directory ```nohighlight /opt/app/nwchem ``` <!-- ## octave{#octave} #### Distribution Website [GNU Octave](https://www.gnu.org/software/octave/) #### module file version | Module File | SystemA | SystemB,C ------- | -------------- | ----- | ----- (in preparation) | octave/xxx | ― | + #### Install Directory ```nohighlight /opt/app/octave ``` --> ## OpenCV{#opencv} #### Distribution Website [Open Computer Vision Library](http://sourceforge.net/projects/opencvlibrary/) #### module file version | Module File | SystemA | SystemB,C ------- | ------------------------- | ----- | ----- 3.1.0 | opencv/3.1.0_gnu-4.8 | + | ― 2.4.13 | opencv/2.4.13_intel-16.0 | ― | + 2.4.13 | opencv/2.4.13_gnu-5.3 | + | ― #### Install Directory ```nohighlight /opt/app/opencv ``` ## OpenFOAM{#openfoam} #### Distribution Website [OpenFOAM Foundation](http://www.openfoam.org/) #### module file version | Module File | SystemA | SystemB,C ------- | --------------------------- | ----- | ----- 5.0 | openfoam/5.0_intel-17.0-impi-2017.4 | ― | + 4.0 | openfoam/4.0_intel-16.0-impi-5.1 | ― | + 4.0 | openfoam/4.0_gnu-6.1 | + | ― 2.3 | openfoam/2.3.1_gnu-4.8-openmpi-2.0 | ― | + #### Install Directory ```nohighlight /opt/app/openfoam ``` #### Important notice When you run the execution script “Allrun” by using the sample program for the tutorial, modify the Allrun script if it includes MPI, as described below. **When running in interactive mode.**  Modify the Allrun script as shown below, and run ./Allrun directly. ```nohighlight (Before modifying) # Source tutorial run functions . $WM_PROJECT_DIR/bin/tools/RunFunctions (After modifying) # Source tutorial run functions . $WM_PROJECT_DIR/bin/tools/RunFunctions.tssrun ``` **When running in batch mode.**  Modify the Allrun script as shown below, and run ./Allrun in the job script. ```nohighlight (Before modifying) # Source tutorial run functions . $WM_PROJECT_DIR/bin/tools/RunFunctions (After modifying) # Source tutorial run functions . $WM_PROJECT_DIR/bin/tools/RunFunctions.impi ``` ## OpenFOAM by OpenCFD{#openfoam.com} #### Distribution Website [OpenFOAM The open source CFD toolbox](http://www.openfoam.com/) #### module file Version | Module File | SystemA | SystemB,C ------- | --------------------------- | ----- | ----- v2106 | openfoam.com/v2106_gnu-4.8-impi-2018.4 | ― | + v2006 | openfoam.com/v2006_gnu-4.8-impi-2018.4 | ― | + v1812 | openfoam.com/v1812_intel-17.0 | + | ― v1812 | openfoam.com/v1812_intel-17.0-impi-2017.4 | ― | + v1712 | openfoam.com/v1712_intel-17.0 | + | ― v1712 | openfoam.com/v1712_intel-17.0-impi-2017.4 | ― | + NOTE: Paraview in system A doesn't work. Paraview in v1812 doesn't work. NOTE: When using version v1812 or later, it is necessary to load the paraview module. #### Install Directory ```nohighlight /opt/app/openfoam.com ``` ## OpenMX{#openmx} #### Distribution Website [OpenMX](http://www.openmx-square.org/) #### module file version | Module File | SystemA | SystemB,C ------ | --------------- | ----- | ----- 3.9.2 | openmx/3.9.2_intel-18.0 | + | ― 3.8.5 | openmx/3.8.5_intel-17.0 | + | ― 3.8 | openmx/3.8_intel-17.0-impi-2017.4 | ― | + #### Install Directory ```nohighlight /opt/app/openmx ``` ## paraview{#paraview} #### Distribution Website [Paraview - Open Source Scientific Visualization](http://www.paraview.org/) #### module file version | Module File | SystemA | SystemB,C ------ | --------------- | ----- | ----- 5.9.0 | paraview/5.9.0 | ― | + 5.5.2 | paraview/5.5.2 | ― | + 5.1.2 | paraview/5.1.2 | ― | + #### Install Directory ```nohighlight /opt/app/paraview ``` ## parMetis{#parmetis} #### Distribution Website [METIS - Serial Graph Partitioning and Fill-reducing Matrix Ordering](http://glaros.dtc.umn.edu/gkhome/metis/metis/overview) #### module file Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 4.0.2 | cray-tpsl/18.06.1 | + | ― ― | cray-tpsl/17.11.1 | + | ― ― | cray-tpsl/16.12.1 | + | ― 4.0.3 | parmetis/4.0.3_intel-17.0-impi-2017.2 | ― | + #### Install Directory System A ```nohighlight /opt/cray/pe/tpsl ``` System B,C ```nohighlight /opt/app/parmetis ``` <!-- in preparation ## pdftk{#pdftk} #### Distribution Website [PDF Labs](http://www.pdflabs.com/) #### module file version | Module File | SystemA | SystemB,C ---------------------- | ---------------------- | ----- | ----- xxx | pdftk/xxx | + | ― #### Install Directory ```nohighlight /opt/app/pdftk ``` --> ## PETSc{#petsc} #### Distribution Website [PETSc Home Page](http://www.mcs.anl.gov/petsc/) #### module file * real version version | Module File | SystemA | SystemB,C ------------------------------ | -------------- | ----- | ----- 3.11.2.0 | cray-petsc/3.11.2.0 | + | ― 3.9.3.0 | cray-petsc/3.9.3.0 | + | ― 3.8.4.0 | cray-petsc/3.8.4.0 | + | ― 3.7.6.2 | cray-petsc/3.7.6.2 | + | ― 3.7.6.0 | cray-petsc/3.7.6.0 | + | ― 3.7.4.0 | cray-petsc/3.7.4.0 | + | ― 3.7.4 | petsc/3.7.4_intel-17.0-impi-2017.1<br>petsc/3.7.4_gnu-4.8 | ― | + 3.7.2.1 | cray-petsc/3.7.2.1 | + | ― 3.7.2.0 | cray-petsc/3.7.2.0 | + | ― 3.7.2 | petsc/3.7.2_intel-16.0<br>petsc/3.7.2_gnu-4.8 | ― | + 3.6.3.0 | cray-petsc/3.6.3.0 | + | ― * 64bit real version version | Module File | SystemA | SystemB,C ------------------------------ | -------------- | ----- | ----- 3.11.2.0 | cray-petsc-64/3.11.2.0 | + | ― 3.9.3.0 | cray-petsc-64/3.9.3.0 | + | ― 3.8.4.0 | cray-petsc-64/3.8.4.0 | + | ― 3.7.6.2 | cray-petsc-64/3.7.6.2 | + | ― 3.7.6.0 | cray-petsc-64/3.7.6.0 | + | ― 3.7.4.0 | cray-petsc-64/3.7.4.0 | + | ― 3.7.2.1 | cray-petsc-64/3.7.2.1 | + | ― 3.7.2.0 | cray-petsc-64/3.7.2.0 | + | ― 3.6.3.0 | cray-petsc-64/3.6.3.0 | + | ― * complex version version | Module File | SystemA | SystemB,C ------------------------------ | -------------- | ----- | ----- 3.11.2.0 | cray-petsc-complex/3.11.2.0 | + | ― 3.9.3.0 | cray-petsc-complex/3.9.3.0 | + | ― 3.8.4.0 | cray-petsc-complex/3.8.4.0 | + | ― 3.7.6.2 | cray-petsc-complex/3.7.6.2 | + | ― 3.7.6.0 | cray-petsc-complex/3.7.6.0 | + | ― 3.7.4.0 | cray-petsc-complex/3.7.4.0 | + | ― 3.7.4 | petsc-complex/3.7.4_intel-17.0-impi-2017.1 | ― | + 3.7.2.1 | cray-petsc-complex/3.7.2.1 | + | ― 3.7.2.0 | cray-petsc-complex/3.7.2.0 | + | ― 3.7.2 | petsc-complex/3.7.2_intel-17.0-impi-2017.1 | ― | + 3.6.3.0 | cray-petsc-complex/3.6.3.0 | + | ― * 64bit complex version version | Module File | SystemA | SystemB,C ------------------------------ | -------------- | ----- | ----- 3.11.2.0 | cray-petsc-complex-64/3.11.2.0 | + | ― 3.9.3.0 | cray-petsc-complex-64/3.9.3.0 | + | ― 3.8.4.0 | cray-petsc-complex-64/3.8.4.0 | + | ― 3.7.6.2 | cray-petsc-complex-64/3.7.6.2 | + | ― 3.7.6.0 | cray-petsc-complex-64/3.7.6.0 | + | ― 3.7.4.0 | cray-petsc-complex-64/3.7.4.0 | + | ― 3.7.2.1 | cray-petsc-complex-64/3.7.2.1 | + | ― 3.7.2.0 | cray-petsc-complex-64/3.7.2.0 | + | ― 3.6.3.0 | cray-petsc-complex-64/3.6.3.0 | + | ― #### Install Directory * System A ```nohighlight /opt/cray/pe/petsc /opt/cray/pe/petsc-complex ``` * System B,C ```nohighlight /opt/app/petsc /opt/app/petsc-complex ``` ## PHASE{#phase} #### Distribution Website [RSS21](http://www.ciss.iis.u-tokyo.ac.jp/rss21/index.html) #### module file Please contact us if you want to use this software. <!-- version | Module File | SystemA | SystemB,C -------- | ------------------------ | ----- | ----- 2019.02.01 | phase/2019.02.01_intel-18.0 | + | ― 2015.01.01 | phase/2015.01.01_intel-16.0 | + | ― #### Install Directory ```nohighlight /opt/app/phase0 ``` --> #### Note **Those who want to use this software must observe the following conditions. (write acknowledgments in your paper, etc.)** https://azuma.nims.go.jp/cms1/downloads/software ## plplot{#plplot} #### Distribution Website [PLplot Home Page](http://plplot.sourceforge.net/) #### module file version | Module File | SystemA | SystemB,C ------------------------ | ------------------------- | ----- | ----- 5.13.0 | plplot/5.13.0_intel-17.0 | ― | + 5.11.1 | plplot/5.11.1_gnu-4.8 | ― | + #### Install Directory ```nohighlight /opt/app/plplot ``` ## PSI4{#psi4} #### Distribution Website [PSI4 - OpenSource Quantum Chemistry](http://www.psicode.org/) #### module file バージョン | モジュールファイル名 | システムA | システムB,C ------------------------ | ------------------------- | ----- | ----- 1.1 | psi4/1.1 | ― | + #### Install Directory ```nohighlight /opt/app/psi4 ``` ## Python{#python} The following four Python language are available for use on the ACCMS supercomputer. * [Anaconda](#anaconda) * [Cray Python](#craypython) * [Intel Distribution Python](#intelpython) * Installed by default in the Operation System. ### If you use the Python in Anaconda #### module file See [Anaconda](#anaconda) #### How to use ```nohighlight $ python ``` ### If you use the Python in Cray Python (Only for SystemA) #### module file See [Cray Python](#craypython) #### How to use ```nohighlight $ python ``` ### If you use the Python in Intel Distribution Python (Only for SystemB/C) #### module file See [Intel Distribution Python](#intelpython) #### How to use ```nohighlight $ python ``` ### If you use the Python in installed by default in the operating system. #### Available Version version | SystemA | SystemB,C --------------------------| --------- | ----------- 2.7.13 | + | - 2.7.5 | - | + #### How to use ```nohighlight $ python ``` #### Install Dir ```nohighlight /usr/bin/python ``` ### Tips #### How to use the package management tool (pip) Users can install arbitrary packages with pip, the Python package management tool. ##### How to install ```nohighlight # How to install pip install {Package name} --user e.g. To install tensorflow pip install tensorflow --user ``` ##### How to uninstall ```nohighlight # How to uninstall pip uninstall {Package名} --user e.g. To uninstall tensorflow pip uninstall tensorflow --user ``` ##### How to find the application ```nohighlight pip search {Word or phrase to search for.} e.g. To find tensorflow pip search tensorflow ```` ##### View Installed Packages ```nohighlight pip list ``` ## Quantum ESPRESSO{#qe} #### Distribution Website [Quantum ESPRESSO](http://www.quantum-espresso.org/) #### module file Version | Module File | SystemA | SystemB,C -------------------------- | ----------------------- | ----- | ----- 6.3 | qe/6.3_intel-17.0-impi-2017.4 | ― | + 6.3 | qe/6.3_intel-17.0 | + | ― 6.1 | qe/6.1_intel-18.0-impi-2018.0 | ― | + 6.1 | qe/6.1_intel-17.0 | + | ― #### Install Directory ```nohighlight /opt/app/qe ``` ## R{#r} #### Distribution Website [The R Project for Statistical Computing](http://www.r-project.org/) #### module file version | Module File | SystemA | SystemB,C -------- | -------------------- | ----- | ----- 4.1.0 | R/4.1.0_intel-18.0 | + | + 4.0.2 | R/4.0.2_gnu-4.8 | ― | + 3.6.2 | R/3.6.2_intel-18.0 | + | ― 3.6.2 | R/3.6.2_gnu-4.8 | ― | + 3.5.3 | R/3.5.3_intel-18.0 | + | ― 3.4.1 | R/3.4.1_gnu-4.8 | ― | + 3.3.1 | R/3.3.1_intel-16.0 | + | ― 3.3.1 | R/3.3.1_gnu-4.8 | ― | + #### Install Directory ```nohighlight /opt/app/R ``` ## Rstudio{#rstudio} #### Distribution Website [RStudio – Open source and enterprise-ready professional software for R](https://www.rstudio.com/) #### module file version | Module File | SystemA | SystemB,C -------- | -------------------- | ----- | ----- 1.0 | rstudio/1.0.136 | ― | + 0.98 | rstudio/0.98.1091 | ― | + \* Currently the version 1.0 has a problem that the keyboard mapping becomes scrumbled on Exceed onDemand. #### Install Directory ```nohighlight /opt/app/rstudio ``` ## SALMON{#salmon} #### Distribution Website [SALMON (Scalable Ab-initio Light-Matter simulator for Optics an D Nanoscience)](http://salmon-tddft.jp/jp/in Dex.html) #### Module File Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 2.0.0 | salmon/2.0.0_intel-18.0 | + | ― 1.2.1 | salmon/1.2.1_intel-18.0 | + | ― 1.2.0 | salmon/1.2.0_intel-17.0 | + | ― #### Installation Directory ```nohighlight /opt/app/salmon ``` ## SALS{#sals} #### module file version | Module File | SystemA | SystemB,C --------------------- | ------------------ | ----- | ----- 2.5 | sals/2.5_cray-8.5 | + | ― " | sals/2.5_intel-16.0 | + | + " | sals/2.5_gnu-6.1 | + | ― " | sals/2.5_gnu-4.8 | ― | + #### Install Directory ```nohighlight /opt/app/sals ``` #### Example of compiling and linking ```nohighlight $ ifort main.f $SALS_SLIB_D (Static link library in double precision) $ ifort main.f $SALS_SLIB_S (Static link library in single precision) $ ifort main.f $SALS_DLIB_D (Dynamic link library in double precision) $ ifort main.f $SALS_DLIB_S (Dynamic link library in single precision) ``` #### Important Notice When you publish a printed report of a research that uses SALS, you need to include the program name SALS and the name of the author in the report. Copying an installed SALS and giving it to a third party is not allowed. ## SCOTCH{#scotch} #### Distribution Website [SCOTCH](http://www.labri.fr/perso/pelegrin/scotch/) #### module file Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 6.0.6 | cray-tpsl/19.06.1 | + | ― 6.0.4 | cray-tpsl/18.06.1 | + | ― ― | cray-tpsl/17.11.1 | + | ― ― | cray-tpsl/16.12.1 | + | ― 6.0.4 | scotch/6.0.4_intel-17.0-impi-2017.2 | ― | + #### Install Directory System A ```nohighlight /opt/cray/pe/tpsl ``` System B,C ```nohighlight /opt/app/scotch ``` ## Singularity{#singularity} #### module file Version | Module File | System A | System B,C --------------- | ---------------------| ------ | ----- 3.6.2 | singularity/3.6.2 | ― | + #### Install Directory ```nohighlight /opt/app/singurality ``` ## SLEPc{#slepc} #### Distribution Website [SLEPc Home Page](http://slepc.upv.es/) #### module file version | Module File | SystemA | SystemB,C ------------------------------ | ---------------------- | ----- | ----- 3.7.4 | slepc/3.7.4_intel-17.0 | + | ― 3.7.4 | slepc/3.7.4_intel-17.0-impi-2017.2 | ― | + 3.7.4-complex | slepc-complex/3.7.4_intel-17.0 | + | ― 3.7.4-complex | slepc-complex/3.7.4_intel-17.0-impi-2017.2 | ― | + #### Install Directory ```nohighlight /opt/app/slepc /opt/app/slepc-complex ``` ## SMASH{#smash} #### Distribution Website [SMASH](http://smash-qc.sourceforge.net/) #### Module File Version | Module File | System A | System B,C -------------------------- | ----------------------- | ----- | ----- 2.2.0 | smash/2.2.0_intel-17.0 | + | ― #### Installation Directory ```nohighlight /opt/app/smash ``` ## SmokeView{#smokeview} #### Distribution Website [SmokeView](https://github.com/firemodels/smv) #### Module File Version | Module File | SystemA | SystemB,C -------------------------- | ----------------------- | ----- | ----- 6.7.14 | smokeview/6.7.14_intel-18.0 | ― | + #### Install Directory ```nohighlight /opt/app/smokeview ``` ## SuperLU{#superlu} #### Distribution Website [SuperLU](http://crd-legacy.lbl.gov/~xiaoye/SuperLU/) #### module file version | Module File | SystemA | SystemB,C ------ | ------------------------ | ----- | ----- 6.1 | cray-tpsl/19.06.1 | + | ― 5.2 | cray-tpsl/18.06.1 | + | ― ― | cray-tpsl/17.11.1 | + | ― ― | cray-tpsl/16.12.1 | + | ― 5.2.1 | superlu/5.2.1 | ― | + #### Install Directory System A ```nohighlight /opt/cray/pe/tpsl ``` System B,C ```nohighlight /opt/app/superlu ``` ## Trilinos{#trilinos} #### Distribution Website [The Trilinos Project](https://trilinos.org/) #### module file version | Module File | SystemA | SystemB,C ------ | ------------------------ | ----- | ----- 12.14.1.0 | cray-trilinos/12.14.1.0 | + | ― 12.14.0 | trilinos/12.14.0_intel-18.0-impi-2018.3 | ― | + 12.12.1.1 | cray-trilinos/12.12.1.1 | + | ― 12.10.1.2 | cray-trilinos/12.10.1.2 | + | ― 12.10.1.1 | cray-trilinos/12.10.1.1 | + | ― 12.10.1 | trilinos/12.10.1_intel-17.0-impi-2017.2 | ― | + 12.8.1.0 | cray-trilinos/12.8.1.0 | + | ― 12.6.3.3 | cray-trilinos/12.6.3.3 | + | ― 12.6.3.1 | cray-trilinos/12.6.3.1 | + | ― 12.2.1.0 | cray-trilinos/12.2.1.0 | + | ― #### Install Directory System A ```nohighlight /opt/cray/pe/trilinos ``` System B,C ```nohighlight /opt/app/trilinos ``` ## WRF{#wrf} #### Distribution Website [WRF Model UsersSite](http://www.mmm.ucar.edu/wrf/users/) #### module file version | Module File | SystemA | SystemB,C ---------------------- | ------------------- | ----- | ----- 3.8.1 | wrf/3.8.1_cray-8.5 | + | ― " | wrf/3.8.1_intel-16.0 | + | + <span style="color:red;">We provide the compiled module file as a sample, because the WRF includes various simulation models. Please copy the sample configuration file depending on the simulation model you use, compile in your own local environment.</span> #### How to Compile The example below shows how to compile in the system A. 1. Set up the environment. ```nohighlight $ module switch PrgEnv-cray PrgEnv-intel $ module load cray-netcdf $ export NETCDF=/opt/cray/pe/netcdf/4.4.0/intel/150 ``` 2. Download the source at the WRF website, then overwrite the configure_new.defaults file in the WRFV3/arch/ directory with the file in the following directory. ```nohighlight /opt/app/wrf/3.8.1/intel-16.0/arch/configure_new.defaults ``` 4. Execute the ./configure in the WRFV3 directory. Items for each compiler will be displayed. Select one of the following: serial, smpar, dmpar, or dm+sm. 4. Compile by the model you need, according to the menu of the ./compile command. #### Install Directory ```nohighlight /opt/app/wrf ``` ## Vim{#vim} #### Distribution Website [Vim](https://www.vim.org/) #### #### module file version | Module File | SystemA | SystemB,C ------ | --------------------- | ------ | ----- 8.2 | vim/8.2 | + | + #### Install Directory ```nohighlight /opt/app/vim ``` ## VisIt{#visit} #### Distribution Website [VisIt](https://wci.llnl.gov/simulation/computer-codes/visit/) #### module file version | Module File | SystemA | SystemB,C ------ | ------------------------ | ----- | ----- 2.11.0 | visit/2.11.0 | ― | + #### Install Directory ```nohighlight /opt/app/visit ``` ## VTK{#vtk} #### Distribution Website [VTK - The Visualization Toolkit](https://vtk.org/) #### module file version | Module File | SystemA | SystemB,C ------ | ------------------------ | ----- | ----- 8.2.0 | vtk/8.2.0_gnu-6.1 | ― | + 8.2.0 | vtk/8.2.0_gnu-8.2 | + | ― 7.1.1 | vtk/7.1.1_intel-18.0 | + | ― #### Install Directory ```nohighlight /opt/app/vtk ``` #### Note Visual output functions using OpenGL are not available in system A.