... | ... |
@@ -25,12 +25,13 @@ $ ssh username@hostname |
25 | 25 |
``` |
26 | 26 |
3. If a prompt of the form [username@hostname ~] is displayed, the login is successful. |
27 | 27 |
|
28 |
-### Access{#access} |
|
28 |
+### Connection Destination{#access} |
|
29 | 29 |
|
30 | 30 |
The host names for each system are as follows. |
31 | 31 |
|
32 | 32 |
| System Name | Host Name | Note | |
33 | 33 |
| --- | --- | --- | |
34 |
+| System A | camphor.kudpc.kyoto-u.ac.jp | Consists of two login nodes. | |
|
34 | 35 |
| System B/Cloud | laurel.kudpc.kyoto-u.ac.jp | Consists of three login nodes. | |
35 | 36 |
| System C | cinnamon.kudpc.kyoto-u.ac.jp | Consists of three login nodes. | |
36 | 37 |
| System G | gardenia.kudpc.kyoto-u.ac.jp | Consists of two login nodes. | |
... | ... |
@@ -68,8 +68,9 @@ DEK-Info: AES-128-CBC,7A30F993641D4093A373703A3F644D2D |
68 | 68 |
--> |
69 | 69 |
1. Start your browser and go to one of the following addresses. |
70 | 70 |
|
71 |
- Destination | Address |
|
71 |
+ Connection Destination | Address |
|
72 | 72 |
---------- | ------------ |
73 |
+ System A | [https://camphor31.kudpc.kyoto-u.ac.jp/](https://camphor31.kudpc.kyoto-u.ac.jp/) |
|
73 | 74 |
System B/C | [https://laurel31.kudpc.kyoto-u.ac.jp/](https://laurel31.kudpc.kyoto-u.ac.jp/) |
74 | 75 |
System G | [https://gardenia11.kudpc.kyoto-u.ac.jp/](https://gardenia11.kudpc.kyoto-u.ac.jp/) |
75 | 76 |
Application Server | [https://app.kudpc.kyoto-u.ac.jp/](https://app.kudpc.kyoto-u.ac.jp/) |
... | ... |
@@ -17,12 +17,13 @@ Generate a public/private key pair by following [Generating Key Pair and Registe |
17 | 17 |
## How to transfer files{#transfer} |
18 | 18 |
We provide instructions for connecting using scp and sftp commands. On Windows, you can also connect using [MobaXterm](/login/mobaxterm). MobaXterm allows file transfers via GUI. |
19 | 19 |
|
20 |
-### Access |
|
20 |
+### Connection Destination |
|
21 | 21 |
The host names for each system are as follows. |
22 | 22 |
|
23 | 23 |
| System Name | Host Name | Note | |
24 | 24 |
| --- | --- | --- | |
25 | 25 |
| File Transfer Server | hpcfs.kudpc.kyoto-u.ac.jp | **recommended**<br>Consists of two servers. Dedicated SFTP and RSYNC servers with no time limits. | |
26 |
+| System A | camphor.kudpc.kyoto-u.ac.jp | Consists of two login nodes. | |
|
26 | 27 |
| System B/Cloud | laurel.kudpc.kyoto-u.ac.jp |Consists of three login nodes. | |
27 | 28 |
| System C | cinnamon.kudpc.kyoto-u.ac.jp | Consists of three login nodes. | |
28 | 29 |
| System G | gardenia.kudpc.kyoto-u.ac.jp | Consists of two login nodes. | |
... | ... |
@@ -62,7 +63,7 @@ Enter passphrase for key 'id_rsa': |
62 | 63 |
|
63 | 64 |
### File transfers using the sftp command{#sftp} |
64 | 65 |
```nohighlight |
65 |
-$ sftp [Option] [Destination] |
|
66 |
+$ sftp [Option] [Connection Destination] |
|
66 | 67 |
``` |
67 | 68 |
|
68 | 69 |
#### Example |
... | ... |
@@ -33,7 +33,7 @@ MobaXterm is an extended terminal for Windows with SSH client, X11 server, netwo |
33 | 33 |
![sshadd_2](sshadd_2.png?lightbox=80%&resize=500) |
34 | 34 |
6. Enter the passphrase for the private key on start-up and click OK.<br>※Thereafter, the passphrase for the private key is entered when starting MobaXterm. |
35 | 35 |
|
36 |
-## How to Access{#login} |
|
36 |
+## How to log in{#login} |
|
37 | 37 |
1. After clicking on the 'Sessions' icon, click on 'SSH'. |
38 | 38 |
2. Enter the host name according to the system you are logging in to in the Remote host field. |
39 | 39 |
3. Check 'Specify username' and enter the supercomputer system user number (ID) in the box. |
... | ... |
@@ -73,13 +73,14 @@ Log in to the system as described in [How to Access](#login). No special configu |
73 | 73 |
5. If successful, your home directory on the supercomputer will be displayed. You can upload on the supercomputer with the up arrow and download to your local machine with the down arrow. |
74 | 74 |
![sftp_2](sftp_2.png?lightbox=80%&resize=500) |
75 | 75 |
|
76 |
-## Access Point{#access} |
|
76 |
+## connection destination{#access} |
|
77 | 77 |
The host names for each system are as follows. |
78 | 78 |
|
79 |
-| System Name | Host Name | Note | |
|
79 |
+| System | Host | Note | |
|
80 | 80 |
| --- | --- | --- | |
81 |
-| File Transfer Server | hpcfs.kudpc.kyoto-u.ac.jp | Consists of two servers.<br>Dedicated SFTP and RSYNC servers with no time limits. | |
|
81 |
+| System A | camphor.kudpc.kyoto-u.ac.jp | Consists of two login nodes. | |
|
82 | 82 |
| System B/Cloud | laurel.kudpc.kyoto-u.ac.jp | Consists of three login nodes. | |
83 | 83 |
| System C | cinnamon.kudpc.kyoto-u.ac.jp | Consists of three login nodes. | |
84 | 84 |
| System G | gardenia.kudpc.kyoto-u.ac.jp | Consists of two login nodes. | |
85 | 85 |
| Application Server | app.kudpc.kyoto-u.ac.jp | | |
86 |
+| File Transfer Server | hpcfs.kudpc.kyoto-u.ac.jp | Consists of two servers.<br>Dedicated SFTP and RSYNC servers with no time limits. | |
... | ... |
@@ -37,29 +37,31 @@ The host name for each system is as follows. Please log in with the login name ( |
37 | 37 |
|
38 | 38 |
|System Name | Host Name | Notes | |
39 | 39 |
| --- | --- | --- | |
40 |
-| File Transfer Server | hpcfs.kudpc.kyoto-u.ac.jp | Consists of two servers. Dedicated SFTP and RSYNC servers with no time limit.| |
|
41 |
-| SysB/Cloud | laurel.kudpc.kyoto-u.ac.jp | Consists of three login nodes. | |
|
42 |
-| SysC | cinnamon.kudpc.kyoto-u.ac.jp | Connect to the laurel login node with the Cinnamon environment loaded. | |
|
40 |
+| SysA | camphor.kudpc.kyoto-u.ac.jp | Consists of two login nodes. | |
|
41 |
+| SysB/Cloud | laurel.kudpc.kyoto-u.ac.jp | Consists of three login nodes. | |
|
42 |
+| SysC | cinnamon.kudpc.kyoto-u.ac.jp | Consists of three login nodes. | |
|
43 | 43 |
| SysG | gardenia.kudpc.kyoto-u.ac.jp | Consists of two login nodes. | |
44 |
-<!-- |
|
45 |
-| A | camphor.kudpc.kyoto-u.ac.jp | Consists of two login nodes. | |
|
44 |
+| File Transfer Server | hpcfs.kudpc.kyoto-u.ac.jp | Consists of two servers. Dedicated SFTP and RSYNC servers with no time limit. | |
|
46 | 45 |
|
47 | 46 |
#### fingerprint |
48 | 47 |
|
49 | 48 |
The fingerprint for each system is as follows.Please use it to confirm the fingerprint that is displayed when you first login to the system via SSH. |
50 | 49 |
|
51 |
- | System | Method | fingerprint |
|
52 |
- | ------------ | ------- | ----------------------------- |
|
53 |
- | SysB/SysC/Cloud | RSA | **SHA256:** c3KPtVlPbgGW+jFM8VdGd4yob4HX/VPH7nR26JHS13M |
|
54 |
- | '' | ED25519 | **SHA256:** jt5nEfylQ+SjG5PUZtKqP1DXk56p+7ugwF8GHx8Nr/Q |
|
55 |
- | '' | ECDSA | **SHA256:** yJN7gkHzsrlRBwvYsTCiQkXnzEkdZmjMZLs9TO8YylU |
|
56 |
- | SysG | RSA | **SHA256:** 7GWj0iRCCMpswAWWyIZC+FMX3xlQVRyFiP9hIUYl3rU |
|
57 |
- | '' | ED25519 | **SHA256:** 8uh/6B14HEz77F1yAq95CyQHLqKqr4DG2Xys7eQr0qk |
|
58 |
- | '' | ECDSA | **SHA256:** PJX5f4jPqjTM4Awpod8fedTEXknIBamdexYK3fAzl6U |
|
59 |
- | File Transfer Server | RSA | **SHA256:** /ZeTSRgrxAo4Et1E9NouKs8xyhc/KAjgRpqaEgf37sM |
|
60 |
- | '' | ED25519 | **SHA256:** v0ABGIXX735Ak2By6zq1IuwPAPwLmJC8IwEhzAlm7ds |
|
61 |
- | '' | ECDSA | **SHA256:** RtD7xSYrSL/F6KZpZcjluDFlQ37CIVD6ij2GhEYOaO0 |
|
50 |
+ | System | Method | fingerprint |
|
51 |
+ | ------------ | ------- | ----------------------------- | |
|
52 |
+ | SysA | RSA | **SHA256:** o/Ef0rC2uksvUax14XF6R9c3WHWypaSDfDjDJ0lkreQ | |
|
53 |
+ | '' | ED25519 | **SHA256:** yoBITHVW+ENaAAAlW+ZZDCUBnCNFEhBDsnWHjMHFKx0 | |
|
54 |
+ | '' | ECDSA | **SHA256:** 8j+LvvPha40b2ZwrN3J7s3fyzD+SxHU67/5MwKAUqVU | |
|
55 |
+ | SysB/SysC/Cloud | RSA | **SHA256:** c3KPtVlPbgGW+jFM8VdGd4yob4HX/VPH7nR26JHS13M | |
|
56 |
+ | '' | ED25519 | **SHA256:** jt5nEfylQ+SjG5PUZtKqP1DXk56p+7ugwF8GHx8Nr/Q | |
|
57 |
+ | '' | ECDSA | **SHA256:** yJN7gkHzsrlRBwvYsTCiQkXnzEkdZmjMZLs9TO8YylU | |
|
58 |
+ | SysG | RSA | **SHA256:** 7GWj0iRCCMpswAWWyIZC+FMX3xlQVRyFiP9hIUYl3rU | |
|
59 |
+ | '' | ED25519 | **SHA256:** 8uh/6B14HEz77F1yAq95CyQHLqKqr4DG2Xys7eQr0qk | |
|
60 |
+ | '' | ECDSA | **SHA256:** PJX5f4jPqjTM4Awpod8fedTEXknIBamdexYK3fAzl6U | |
|
61 |
+ | File Transfer Server | RSA | **SHA256:** /ZeTSRgrxAo4Et1E9NouKs8xyhc/KAjgRpqaEgf37sM | |
|
62 |
+ | '' | ED25519 | **SHA256:** v0ABGIXX735Ak2By6zq1IuwPAPwLmJC8IwEhzAlm7ds | |
|
63 |
+ | '' | ECDSA | **SHA256:** RtD7xSYrSL/F6KZpZcjluDFlQ37CIVD6ij2GhEYOaO0 | |
|
64 |
+ |
|
62 | 65 |
|
63 | 66 |
## How to Login {#login} |
64 | 67 |
|
... | ... |
@@ -80,20 +82,19 @@ Please refer to [File transfer with SSH](/login/transfer) for file transfer usin |
80 | 82 |
|
81 | 83 |
There are three supercomputer login nodes in Systems B, C, and Cloud standard, and two in System G. They are operated by DNS round robin for load balancing. If a failure occurs on some of those nodes, login by DNS round robin may fail. Please follow the procedure below to login by specifying individual host names. |
82 | 84 |
|
83 |
-| システム名 | ホスト名 | |
|
85 |
+| System | Host | |
|
84 | 86 |
| ------------------ | ------------------------------ | |
85 |
-| SysB/Cloud | `laurel31.kudpc.kyoto-u.ac.jp` | |
|
87 |
+|SysA | `camphor31.kudpc.kyoto-u.ac.jp` | |
|
88 |
+| '' | `camphor32.kudpc.kyoto-u.ac.jp` | |
|
89 |
+| SysB/クラウド | `laurel31.kudpc.kyoto-u.ac.jp` | |
|
86 | 90 |
| '' | `laurel32.kudpc.kyoto-u.ac.jp` | |
87 | 91 |
| '' | `laurel33.kudpc.kyoto-u.ac.jp` | |
88 |
-| SysC | `cinnamon32.kudpc.kyoto-u.ac.jp` | |
|
92 |
+| SysC | `cinnamon32.kudpc.kyoto-u.ac.jp` | |
|
89 | 93 |
| '' | `cinnamon32.kudpc.kyoto-u.ac.jp` | |
90 | 94 |
| '' | `cinnamon33.kudpc.kyoto-u.ac.jp` | |
91 |
-| SysG | `gardenia11.kudpc.kyoto-u.ac.jp` | |
|
95 |
+| SysG | `gardenia11.kudpc.kyoto-u.ac.jp` | |
|
92 | 96 |
| '' | `gardenia12.kudpc.kyoto-u.ac.jp` | |
93 | 97 |
|
94 |
- |
|
95 |
- |
|
96 |
- |
|
97 | 98 |
<!-- |
98 | 99 |
### 障害情報の通知{#announce} |
99 | 100 |
障害等の情報は、[障害情報ページ](https://kudpc.viewer.kintoneapp.com/public/hpc-problems)でお知らせしています。一部のログインノードに障害が発生した場合、利用いただけないノードのホスト名をお知らせしますので、それ以外のホスト名を指定してログインしてください。なお、障害の発生の時間帯等によっては、お知らせまでに時間を要する場合がありますので、予めご承知おきください。 |
... | ... |
@@ -77,6 +77,7 @@ When the fiscal year changes or the system configuration changes, we review the |
77 | 77 |
|
78 | 78 |
| login node | System Environment | Batch Processing Environment | Compile Environment |
79 | 79 |
|---------- | ---------------- | ------------- | --------------- |
80 |
+| camphor.kudpc.kyoto-u.acjp | SysA | slurm | intel, intelmpi, PrgEnvIntel |
|
80 | 81 |
| laurel.kudpc.kyoto-u.acjp | SysB | slurm | intel, intelmpi, PrgEnvIntel |
81 | 82 |
| cinnamon.kudpc.kyoto-u.ac.jp | SysC | slurm | intel, intelmpi, PrgEnvIntel |
82 | 83 |
| gardenia.kudpc.kyoto-u.ac.jp | SysG | slurm | nvhpc, openmpi, PrgEnvNvidia |
... | ... |
@@ -67,13 +67,22 @@ $ qgroup |
67 | 67 |
|
68 | 68 |
## Initial value of computing resources and the maximum value that can be specified with the --rsc option{#resouce} |
69 | 69 |
|
70 |
-| Option | Description | System B<br>Initial Value | <br>Maximum Value | System C<br>Initial Value | <br>Maximum Value | System G<br>Initial Value | <br>Maximum Value | Cloud<br>Initial Value |<br>Maximum Value | |
|
70 |
+| Option | Description | System A<br>Initial Value|<br>Maximum Value|System B<br>Initial Value | <br>Maximum Value | System C<br>Initial Value | <br>Maximum Value | |
|
71 | 71 |
| --- | --- | --- | --- | |
72 |
-| p | Number of processes | 1 | [Standard Resources](/run/resource#group)<br>(When c=1) | 1 | [Standard Resources](/run/resource#group)<br>(When c=1) | 1 | [Standard Resources](/run/resource#group)<br>(When c=1) | 1 | 1 | |
|
73 |
-| t | Number of threads per process | 1 | 112(224) | 1 | 112(224) | 1 | 64(128) | 1 | 36(72) | |
|
74 |
-| c | Number of cores per process | 1 | 112 | 1 | 112 | 1 | 64 | 1 | 36 | |
|
75 |
-| m | Amount of memory per process<br>(Unit:M, G) | 4571M | 500G | 18392M | 2011G | 8000M | 500G |14222M | 500G| |
|
76 |
-| g | Number of GPUs | - | - | - | - | 1 | [Standard Resources](/run/resource#group) | - | - | |
|
72 |
+| p | Number of processes | 1 | [Standard Resources](/run/resource#group)<br>(When c=1)| 1 | [Standard Resources](/run/resource#group)<br>(When c=1) | 1 | [Standard Resources](/run/resource#group)<br>(When c=1) | |
|
73 |
+| t | Number of threads per process | 1 | 112(224)| 1 | 112(224) | 1 | 112(224) | |
|
74 |
+| c | Number of cores per process | 1 | 112| 1 | 112 | 1 | 112 | |
|
75 |
+| m | Amount of memory per process<br>(Unit:M, G) | 1142M | 128G | 4571M | 500G | 18392M | 2011G | |
|
76 |
+ |
|
77 |
+<br> |
|
78 |
+ |
|
79 |
+| Option | Description | System G<br>Initial Value | <br>Maximum Value | Cloud<br>Initial Value | <br>Maximum Value | |
|
80 |
+| --- | --- | --- | --- | --- | --- | |
|
81 |
+| p | Number of processes | 1 | [Standard Resources](/run/resource#group)<br>(When c=1) | 1 | 1 | |
|
82 |
+| t | Number of threads per process | 1 | 64(128) | 1 | 36(72) | |
|
83 |
+| c | Number of cores per process | 1 | 64 | 1 | 36 | |
|
84 |
+| m | Amount of memory per process<br>(Unit:M, G)| 8000M | 500G |14222M | 500G| |
|
85 |
+| g | GPU数 | 1 | [Standard Resources](/run/resource#group) | - | - | |
|
77 | 86 |
|
78 | 87 |
|
79 | 88 |
* The value of t in () is the maximum value when hyper-threading is enabled. Please specify that t=c✕2 if hyper-threading is enabled. |
... | ... |
@@ -84,7 +93,7 @@ $ qgroup |
84 | 93 |
* If you use system G, you can require resources with either ptcm option or g option. |
85 | 94 |
* When you require resources for each ptcm option, 1 GPU per 16 cores is automatically allocated. |
86 | 95 |
* When you require GPU using g option, it will become as follows. |
87 |
- * If g=1, the same parameter as p=1:c=16:m=128000M is automatically set as well as 1 GPU is allocated. |
|
96 |
+ * If g=1, the same parameter as p=1:c=16:m=128000M is automatically set as well as 1 GPU is allocated. |
|
88 | 97 |
* If g=2, the same parameter as p=2:c=16:m=128,000M is automatically set as well as 2 GPUs are allocated. If you use 2 GPUs in one process, it is available by specifying -n 1 option to the srun command in the job script1. (Example: srun -n 1 . /a.out) Conversely, if you want to increase the number of processes, please adjust the number of cores per process as well with -c option of srun to adjust the number of cores per process as well. (Example: srun -n 9 -c 1 . /a.out) |
89 | 98 |
|
90 | 99 |
<!-- |