Browse code

20230421: various page changed

root authored on2023-04-21 17:25:01
Showing14 changed files
... ...
@@ -19,12 +19,6 @@ If you have any questions or concerns, please contact us using the [Inquiry Form
19 19
 
20 20
 For information on system maintenance, failures, etc., please refer to [Information on IIMC](https://www.iimc.kyoto-u.ac.jp/en/whatsnew/).
21 21
 
22
-### Notice(Apr. 04, 2023)
23
-Changes due to maintenance work at the end of March 2023
24
-* Removed System D/E manuals
25
-* Moved Cloud System manuals from "Other" to "Job Execution
26
-* Expansion of English-enabled pages
27
-
28 22
 ### Table of Contents
29 23
 {% for p in page.collection %}
30 24
 * [{{ p.menu|e }}](https://web.kudpc.kyoto-u.ac.jp{{p.link}})
... ...
@@ -21,13 +21,6 @@ menu: システムの使い方
21 21
 
22 22
 システムのメンテナンス情報、障害情報等は、[情報環境機構のお知らせ](https://www.iimc.kyoto-u.ac.jp/ja/whatsnew/)をご参照ください。
23 23
 
24
-### お知らせ(2023/04/04)
25
-
26
-2023年3月末の保守作業に伴う変更点
27
-- システムD/Eのマニュアルを削除
28
-- クラウドシステムのマニュアルを「その他」から「ジョブ実行」に移動
29
-- 英語化ページの拡大
30
-
31 24
 ### 目次
32 25
 {% for p in page.collection %}
33 26
 * [{{ p.menu|e }}](https://web.kudpc.kyoto-u.ac.jp{{p.link}})
34 27
new file mode 100644
... ...
@@ -0,0 +1,210 @@
1
+---
2
+title: 'Modules - a tool for setting up'
3
+taxonomy:
4
+    category:
5
+        - docs
6
+---
7
+
8
+[toc]
9
+
10
+
11
+## Modules Overview{#overview}
12
+
13
+The Modules software package can dynamically switch and configure the environment settings required to use the compiler, library, and application by executing the module command.
14
+The module command allows you to easily change environment settings for each different versions of compilers, libraries, and applications.
15
+
16
+
17
+## How to Use{#usage}
18
+
19
+
20
+### Basic Operation of the Module Command {#basic}
21
+| Command                         | Purpose                                  |
22
+|---                               |---                                   |
23
+| module list                      | Display all loaded module files.       |
24
+| module avail                     | Display all available module files.   |
25
+| module show [module_file_name]   | Display the module file settings.       |
26
+| module load [module_file_name]   | Load the module files.                     |
27
+| module unload [module_file_name] | Unload the module files.           |
28
+| module switch [module_file_name1] [module_file_name2] |Switch the module files. (module_file_name1→module_file_name2) |
29
+
30
+### Forced switching that ignore module file dependencies
31
+
32
+Module load / unload / switch errors may occur due to dependencies between module files.
33
+If you are aware of the possibility of errors in dependencies, you can force module files to load or switch by using  -f option.
34
+
35
+```bash
36
+## Status immediately after login
37
+$ module list
38
+Currently Loaded Modulefiles:
39
+ 1) slurm/2022   2) SysB/2022   3) intel/2022.3(default)   4) intelmpi/2022.3(default)   5) PrgEnvIntel/2022(default)
40
+
41
+## When trying to switch intel compiler to 2018.4, error occurs.
42
+$ module switch intel/2018.4
43
+Unloading intel/2022.3
44
+  ERROR: intel/2022.3 cannot be unloaded due to a prereq.
45
+    HINT: Might try "module unload PrgEnvIntel/2022" first.
46
+
47
+Switching from intel/2022.3 to intel/2018.4
48
+  ERROR: Unload of switched-off intel/2022.3 failed
49
+
50
+ using 
51
+## Forced switching using -f option
52
+$ module switch intel/2018.4 -f
53
+Unloading intel/2022.3
54
+  WARNING: Dependent 'PrgEnvIntel/2022' is loaded
55
+
56
+## Status after change
57
+$ module list
58
+Currently Loaded Modulefiles:
59
+ 1) slurm/2022   2) SysB/2022   3) intelmpi/2022.3(default)   4) PrgEnvIntel/2022(default)   5) intel/2018.4
60
+
61
+```
62
+
63
+
64
+### How to Use Compiler and Library{#compiler}
65
+
66
+#### Checking the loaded module files
67
+
68
+We provide following three types of comprehensive modules file sets for each programming environment.
69
+These module files provide initial settings for the compiler environment and the MPI environment.
70
+
71
+-  Intel programming environment (standard environment for system A/B/C/D/E) : PrgEnvIntel
72
+-  NVIDIA HPC SDK programming environment (standard environment for system G)  : PrgEnvNvidia
73
+-  GNU programming environment : PrgEnvGCC
74
+
75
+Please use `module list` command to check the current module environment.
76
+
77
+```bash
78
+$ module list
79
+Currently Loaded Modulefiles:
80
+  1) XXX 
81
+```
82
+
83
+#### Switching a programming environment
84
+
85
+The system is the main compiler environment when logging in. 
86
+An example of switching programming environments is provided below.
87
+
88
+**Example: Switching from an Intel environment to an NVIDIA environment**
89
+
90
+```nohighlight
91
+$ module switch PrgEnvIntel PrgEnvNvidia
92
+```
93
+
94
+#### How to switch compiler versions
95
+
96
+If multiple versions are available, you can switch the compiler version to be used.
97
+The following is an example of how to operate for the intel compiler.
98
+
99
+**Example: Switching between prepared programming environments**
100
+
101
+```nohighlight
102
+$ module switch PrgEnvIntel/2022 PrgEnvIntel/2018
103
+```
104
+
105
+**Example: When you load another version of the Intel compiler additionally (the later loaded version takes priority)**
106
+```nohighlight
107
+$ module load intel/Y.Y 
108
+```
109
+
110
+**Example: When you switch Intel compiler versions individually (-f is required)**
111
+```nohighlight
112
+$ module switch intel/X.X intel/Y.Y -f 
113
+```
114
+
115
+The description of the currently loaded version (intel/X.X in the above example) can be omitted.
116
+
117
+```nohighlight
118
+$ module switch intel/Y.Y -f
119
+```
120
+
121
+### How to Use Application With Modules{#application}
122
+
123
+**Example of using MATLAB**
124
+
125
+Execute the module command to make a environment settings. (Load the module files of any version you want.)
126
+
127
+
128
+```nohighlight
129
+$ module load matlab/R2020b
130
+```
131
+
132
+It will be able to execute MATLAB startup commands.
133
+
134
+```nohighlight
135
+$ matlab
136
+```
137
+
138
+**Switching the version of MATLAB(R2020b→R2021a)**
139
+
140
+Execute the module command to change a environment settings.
141
+
142
+
143
+```nohighlight
144
+$ module unload matlab/R2020b
145
+$ module load matlab/R2021a
146
+または
147
+$ module switch matlab/R2021a
148
+```
149
+For how to use the modules with other applications, please refer to [Available Software](/software).
150
+
151
+
152
+## Creating/Adding a Module file{#add_module}
153
+
154
+You can create and use your own module files for your convenience. 
155
+For details on how to create a module file, please refer to [man page](http://modules.sourceforge.net/man/modulefile.html). To use your customized module file, specify the directory where your module file is stored to the module use command  and add the path. To delete the previously-added path, execute the module unuse command. You can check the path of module files using the  environment variable MODULEPATH.
156
+
157
+**Example: Checking the path of module files**
158
+
159
+```nohighlight
160
+## Make the created module file available (for user of x12345)
161
+$ module use /home/x/x12345/mymodule
162
+
163
+## Check the path of the module file
164
+$ echo $MODULEPATH
165
+/home/x/x12345/mymodule:/opt/app/modulefiles/common:
166
+/opt/system/app/env/intel/isv:
167
+/opt/system/app/env/intel/oss:
168
+
169
+## Delete the path you added
170
+$ module unuse /home/x/x12345/mymodule
171
+
172
+## Make the created module file available with a lower priority than the original path
173
+$ module use -a /home/x/x12345/mymodule
174
+
175
+## Check the path of the module file
176
+$ echo $MODULEPATH
177
+/opt/app/modulefiles/common:/opt/system/app/env/intel/isv:
178
+/opt/system/app/env/intel/oss:
179
+/home/x/x12345/mymodule:
180
+```
181
+
182
+**Example: Adding and using a module file**
183
+
184
+```nohighlight
185
+## Check the created module file
186
+$ ls -F /home/x/x12345/mymodule
187
+ruby/
188
+$ ls -F /home/x/x12345/mymodule/ruby
189
+1.8.7  1.9.3  2.1.2
190
+
191
+## Make the created module file available
192
+$ module use /home/x/x12345/mymodule
193
+
194
+## Check that the created module file is displayed
195
+$ module avail
196
+--------------------------- /home/x/x12345/mymodule/ ---------------------------
197
+ruby/1.8.7 ruby/1.9.3 ruby/2.1.2
198
+------------------------- /opt/system/app/intel/ --------------------------
199
+PrgEnvIntel/2022          intel/2022.3
200
+(Omitted)
201
+
202
+## Load the created module file
203
+$ module load ruby/2.1.2e
204
+```
205
+
206
+## Links{#link}
207
+
208
+[Welcome to the Environment Modules Project](http://modules.sourceforge.net/)  
209
+[Man page of Modulefile](http://modules.sourceforge.net/man/modulefile.html)
210
+
... ...
@@ -159,15 +159,15 @@ The following options can be set in the [option] field.
159 159
 |Description in [option] |Execution details|
160 160
 |---  | ---    |
161 161
 |:[0-9] | Execute every specified number. For example, if you specify "1-5:2", 1,3,5 will be executed.|
162
-|%[0-9] | The specified number is set as the maximum number of the concurrent executions.For example, if  you specify "%2", the maximum number of concurrent executions will be "2". |
162
+|%[0-9] | The specified number is set as the maximum number of the simultaneous executions.For example, if  you specify "%2", the maximum number of simultaneous executions will be "2". |
163 163
 
164
-## How to execute multiple programs concurrently on a single computing node{#multirun}
164
+## How to execute multiple programs simultaneously on a single computing node{#multirun}
165 165
 
166
-You can use computing resources effectively by executing multiple programs concurrently as a single job.
167
-You can execute multiple programs concurrently as a single job by describing multiple execution commands in a shell script and executing the shell script.
166
+You can use computing resources effectively by executing multiple programs simultaneously as a single job.
167
+You can execute multiple programs simultaneously as a single job by describing multiple execution commands in a shell script and executing the shell script.
168 168
 
169 169
 ※This method is for a sequential program or a program that is thread-parallelized by OpenMP or automatic parallelization functions.
170
-※It is not possible to execute multiple MPI programs concurrently as a single job.
170
+※It is not possible to execute multiple MPI programs simultaneously as a single job.
171 171
 
172 172
 An example of each script is shown below.
173 173
 
... ...
@@ -175,7 +175,7 @@ An example of each script is shown below.
175 175
 
176 176
 ** Job scripts to be executed by sbatch command (sequential) **
177 177
 
178
-※The following script is a sample of executing four programs concurrently.
178
+※The following script is a sample of executing four programs simultaneously.
179 179
 
180 180
 ```nohighlight
181 181
 #!/bin/bash
... ...
@@ -190,7 +190,7 @@ srun ./multiprocess.sh
190 190
 * Specify the queue with the -p option.
191 191
 * Specify the resource to be used with the --rsc option as follows.
192 192
     * The argument p is the number of processes to be used.
193
-       * Specify the number of programs you wish to execute concurrently. In this case, the number is 4.
193
+       * Specify the number of programs you wish to execute simultaneously. In this case, the number is 4.
194 194
     * The argument c is the number of cores to be used per process (program).
195 195
         * Since the program is a single-threaded execution, specify 1.
196 196
     * The argument t is the number of threads to be used per process (program).
... ...
@@ -214,13 +214,13 @@ esac
214 214
 * When resources are allocated, a rank number is assigned to each process.
215 215
 * When the process is executed, it is possible to read the assigned rank number from the environment variable SLURM_PROCID.
216 216
 * By creating shell scripts that use rank numbers to branch processing, it is possible to separate the programs to be executed by process.
217
-This allows multiple programs to be executed concurrently as a single job.
217
+This allows multiple programs to be executed simultaneously as a single job.
218 218
 
219 219
 #### OpenMP Execution
220 220
 
221 221
 ** Job script to be executed by sbatch command (OpenMP) **
222 222
 
223
-※The following script is a sample to execute 8 programs with 4 threads execution concurrently.
223
+※The following script is a sample to execute 8 programs with 4 threads execution simultaneously.
224 224
 
225 225
 ```nohighlight
226 226
 #!/bin/bash
... ...
@@ -236,7 +236,7 @@ srun ./multiprocess.sh
236 236
 * Specify the queue with the -p option.
237 237
 * Specify the resource to be used with the --rsc option as follows.
238 238
     * The argument p is the number of processes to be used.
239
-         * Specify the number of programs you wish to execute concurrently. In this case, the number is 8.
239
+         * Specify the number of programs you wish to execute simultaneously. In this case, the number is 8.
240 240
     * The argument c is the number of cores to be used per process (program) .
241 241
          * The program is a 4-thread execution, so 4 is specified.
242 242
     * The argument t is the number of threads to be used per process (program) used.
... ...
@@ -264,7 +264,7 @@ esac
264 264
 
265 265
 * When resources are allocated, a rank number is assigned to each process.
266 266
 * When the process is executed, it is possible to read the assigned rank number from the environment variable SLURM_PROCID.
267
-* By creating shell scripts that use rank numbers to branch processing, it is possible to separate the programs to be executed by process. This allows multiple programs to be executed concurrently as a single job.
267
+* By creating shell scripts that use rank numbers to branch processing, it is possible to separate the programs to be executed by process. This allows multiple programs to be executed simultaneously as a single job.
268 268
 
269 269
 By specifying "\#SBATCH --rsc t=4" in the job script, the job scheduler is automatically configured to use 4 threads per process. Therefore, in the above shell script, each program is executed with 4 threads.
270 270
 
271 271
new file mode 100644
... ...
@@ -0,0 +1,83 @@
1
+---
2
+title: 'Compilers and MPI Libraries'
3
+taxonomy:
4
+    category:
5
+        - docs
6
+external_links:
7
+    process: true
8
+    title: false
9
+    no_follow: true
10
+    target: _blank
11
+    mode: active
12
+---
13
+
14
+[toc]
15
+
16
+
17
+## Compiler{#compiler}
18
+
19
+\+ : Available for all users  
20
+\- : Not available
21
+
22
+Compiler  | System B/C | System G | Cloud System 
23
+- | - | - | - 
24
+[Intel](/compilers/intel_classic)  | + | - | +
25
+[NVIDIA HPC SDK](/compilers/nvidia)  | - | + | -
26
+
27
+## Libraries{#library}
28
+
29
+\+ : Available for all users  
30
+AU : Available for academic users only
31
+\- : Not available
32
+
33
+### Libraries for the Message Passing Interface(MPI){#mpi}
34
+
35
+Compiler  | System B/C | System G | Cloud System 
36
+- | - | - | - | - | -
37
+[Intel MPI](/compilers/intelmpi)  |  + | - | + 
38
+[OpenMPI](/compilers/openmpi)  |  - |  + | - 
39
+
40
+### Numerical Libraries{#sci}
41
+
42
+Compiler   | System B/C | System G | Cloud System
43
+- | - | - | - | - | -
44
+[Intel oneMKL](/software/mkl)  | + | - | +
45
+[NAG](/software/nag)  | AU  | - | -  
46
+[IMSL](/software/imsl)  | AU | -  | -  
47
+
48
+<!--
49
+### データ解析ライブラリ
50
+### マルチスレッドライブラリ
51
+### ビデオ処理ライブラリ
52
+### コレクティブコミュニケーションライブラリ
53
+### ディープニューラルネットワークライブラリ
54
+-->
55
+<!--
56
+## プログラミング支援ツール{#tool}
57
+
58
+\+ : すべてのユーザが利用可能  
59
+AU : 学術研究機関限定で利用可能  
60
+\- : 利用不可
61
+
62
+### プロファイラ{#profiler}
63
+
64
+プロファイラ  | システムA  | システムB  | システムC  
65
+- | - | - | - 
66
+[Intel VTune Amplifier](/compilers/intel_vtune)  | -  | +  | +  
67
+[Intel Trace Analyzer/ Collector](/compilers/intel_traceanalyzer)  | ―  | +  | +  
68
+[Intel Advisor](/compilers/intel_advisor)  | -  | +  | +  
69
+
70
+### デバッグ支援ツール{#debugger}
71
+
72
+ツール  | システムA  | システムB  | システムC  
73
+- | - | - | - 
74
+[TotalView](/compilers/totalview)  | AU  | AU  | AU  
75
+[Intel Inspector](/compilers/intel_inspector)  | -  | +  | +  
76
+[Allinea MAP/DDT](/compilers/allinea-map-ddt)  | +  | +  | +  
77
+-->
78
+
79
+<!--
80
+## オープンソースライブラリ{#oss}
81
+
82
+[オープンソースソフトウェア・ライブラリ](/oss)を参照してください。
83
+-->
... ...
@@ -68,7 +68,7 @@ Please refer to  [Interactive Processing](/run/interactive) for details on the t
68 68
 
69 69
 
70 70
 ```nohighlight
71
-$ tssrun --x11 lsprepost
71
+$ tssrun --x11 lspp49
72 72
 ```
73 73
 
74 74
 We provide paper-based materials for the programming seminar on how to use LS-DYNA and LS-PREPOST for your reference at the counter of the Media Center North Building on a first-come, first-served basis. (Please note that the number of materials are limited.)
... ...
@@ -174,17 +174,7 @@ ls971_d i=sample.dyn ncpu=$SLURM_CPUS_PER_TASK
174 174
 ```
175 175
 
176 176
 ## Reference{#references}
177
-
178
-
179
-
180
-### Reference in Japanese{#ref_ja}
181
-
182
-* [LS-DYNA ver971 R5 テクニカルノート](https://web.kudpc.kyoto-u.ac.jp/App_Manual/LS-DYNA/LS-DYNA_ver971r5_TechnicalNote_201008.pdf)
183
-
184
-
185
-### Reference in English{#ref_en}
186
-
187
-* [LS-DYNA KEYWORD USER’S MANUAL VOLUME I/II](https://web.kudpc.kyoto-u.ac.jp/App_Manual/LS-DYNA/ls-dyna_971_manual_k.pdf)
177
+* [LSDYNA Manuals(Ansys)](https://lsdyna.ansys.com/manuals/)
188 178
 
189 179
 
190 180
 ## Links{#link}
... ...
@@ -193,10 +183,5 @@ ls971_d i=sample.dyn ncpu=$SLURM_CPUS_PER_TASK
193 183
 
194 184
 ### External Links{#ex_link}
195 185
 
196
-* [LS-DYNA "JSOL Corporation"](http://ls-dyna.jsol.co.jp/)
197
-
198
-
199
-## Programming Seminars{#seminar}
200
-
186
+* [LS-DYNA "JSOL Corporation"](https://www.jsol-cae.com/product/struct/lsdyna/)
201 187
 
202
-We periodically held [programming seminars](http://www.iimc.kyoto-u.ac.jp/en/services/comp/support/course/), and distribute the seminar materials.
... ...
@@ -70,7 +70,7 @@ $ module load ls-prepost
70 70
 [FastX](/login/fastx)、[NiceDCV](/login/nice-dcv) など、X Window Systemが利用可能な環境でログインした後に、次のコマンドを実行すると起動します。 **tssrun** コマンドの詳細は [会話型処理](/run/interactive) をご覧ください。
71 71
 
72 72
 ```nohighlight
73
-$ tssrun --x11 lsprepost
73
+$ tssrun --x11 lspp49
74 74
 ```
75 75
 
76 76
 なおLS-DYNA、LS-PREPOSTの使用方法の参考資料として、メディアセンター北館窓口で紙媒体の講習会資料を先着順で配布しています。(部数に限りがありますので、ご了承ください。)
... ...
@@ -177,29 +177,12 @@ ls971_d i=sample.dyn ncpu=$SLURM_CPUS_PER_TASK
177 177
 ```
178 178
 
179 179
 ## 参考資料{#references}
180
-
181
-
182
-
183
-### 日本語{#ref_ja}
184
-
185
-* [LS-DYNA ver971 R5 テクニカルノート](https://web.kudpc.kyoto-u.ac.jp/App_Manual/LS-DYNA/LS-DYNA_ver971r5_TechnicalNote_201008.pdf)
186
-
187
-
188
-### 英語{#ref_en}
189
-
190
-* [LS-DYNA KEYWORD USER’S MANUAL VOLUME I/II](https://web.kudpc.kyoto-u.ac.jp/App_Manual/LS-DYNA/ls-dyna_971_manual_k.pdf)
191
-
180
+* [LSDYNA Manuals(Ansys)](https://lsdyna.ansys.com/manuals/)
192 181
 
193 182
 ## リンク{#link}
194 183
 
195 184
 
196
-
197 185
 ### 外部リンク{#ex_link}
198 186
 
199
-* [LS-DYNA (株式会社JSOL)](http://ls-dyna.jsol.co.jp/)
200
-
201
-
202
-## 講習会{#seminar}
203
-
187
+* [Ansys LS-DYNA (株式会社JSOL)](https://www.jsol-cae.com/product/struct/lsdyna/)
204 188
 
205
-[プログラム講習会](http://www.iimc.kyoto-u.ac.jp/ja/services/comp/support/course/) を定期的に開催しています。講習会資料を配布していますので、ご利用ください。
206 189
new file mode 100644
... ...
@@ -0,0 +1,13 @@
1
+---
2
+title: 'Installation of MobaXterm'
3
+---
4
+
5
+[toc]
6
+
7
+## What is MobaXterm?
8
+MobaXterm is an extended terminal for Windows with SSH client, X11 server, network tools and more.
9
+
10
+## Installation
11
+Download the Installer edition from "Download" on the [MobaXterm homepage](https://mobaxterm.mobatek.net/).
12
+Extract the downloaded zip file and execute the installer (MobaXterm_installer_xx.msi). 
13
+※xx is the version number.
0 14
\ No newline at end of file
1 15
new file mode 100644
... ...
@@ -0,0 +1,62 @@
1
+---
2
+title: 'Installation of Archaea (Former HCP Tools)'
3
+---
4
+
5
+[toc]
6
+## What is Archaea (former HCP Tools)?{#hcp_tools}
7
+We provide Archaea (former HCP Tools) as a high-speed file transfer tool.
8
+
9
+Archaea (former HCP Tools) uses HpFP protocol and available for fast file transfer. 
10
+You can use it by installing dedicated package.
11
+
12
+※"HCP Tools" has been renamed "Bytrix Archaea tools".
13
+
14
+## Client Software{#client}
15
+### Version{#current_version}
16
+Archea tools ver.1.4 is installed on the server. When installing the client software, please install **Archaea tools ver.1.4** or **Archaea dialog ver.1.0**.
17
+
18
+### Supported OS{#os}
19
+* Windows:10
20
+* RHEL:7 / 8 / 9
21
+* Ubuntu:1804 / 2004 / 2204
22
+* Raspberry Pi OS:9 / 11
23
+* openSUSE Leap:15.2 / 15.3 / 15.4
24
+* macOS:12 / 13
25
+
26
+### How to Obtain Client Software{#download}
27
+[Download【Latest Version】(CLEALINK TECHNOLOGY)](https://support.bytix.tech/latest/)
28
+
29
+### How to Install{#install}
30
+For how to install, please refer to [Download【Latest Version】(CLEALINK TECHNOLOGY)](https://support.bytix.tech/latest/).
31
+
32
+## How to Use{#how_to_usage}
33
+For how to use Archaea (former HCP Tools), please refer to [File Transfer with Archaea (former HCP Tools)](/login/hcp_tools).
34
+
35
+<!--
36
+### Archea tools{#tools}
37
+
38
+#### インストール(Windows){#install_windows}
39
+1. ダウンロードした BytixArchaeaToolsInstaller.msi を実行します.
40
+2. セットアップ画面が開きますので、使用許諾契約書の内容を確認し、"使用許諾契約書に同意します"にチェックを入れ、インストール をクリックします。![](hcp_client_install_1.png?resize=500)
41
+4. インストールするが終了すると完了画面が出ますので、完了 を押してください。インストールはこれで完了です。![](hcp_client_install_2.png?resize=500)
42
+
43
+#### インストール(RHEL,SLE){#install_rhel}
44
+1. 必要なrpmパッケージをダウンロードします。
45
+2. 以下のようなコマンドでインストールしてください。
46
+```nohighlight
47
+# rpm -ivh bytix-archaea-tools-1.4.2-13.el9.x86_64.rpm
48
+```
49
+
50
+#### インストール(Ubuntu,Debian){#install_ubuntu}
51
+1. 必要なrpmパッケージをダウンロードします。
52
+2. 以下のようなコマンドでインストールしてください。
53
+```nohighlight
54
+# sudo dpkg -i bytix-archaea-tools_1.4.2-13_armhf.deb
55
+```
56
+
57
+### Archea dialog{#dialog}
58
+#### インストール(Windows){#dialog_windows}
59
+1. ダウンロードした BytixArchaeaDialogInstaller.msi を実行します。
60
+2. セットアップ画面が開きますので、使用許諾契約書の内容を確認し、"使用許諾契約書に同意します"にチェックを入れ、インストール をクリックします。![](dialog_install_1.png?resize=500)
61
+3. インストールするが終了すると完了画面が出ますので、完了 を押してください。インストールはこれで完了です。![](dialog_install_2.png?resize=500)
62
+-->
0 63
\ No newline at end of file
1 64
new file mode 100644
... ...
@@ -0,0 +1,18 @@
1
+---
2
+title: 'Installation of Various Tools'
3
+taxonomy:
4
+    category:
5
+        - docs
6
+---
7
+
8
+[toc]
9
+
10
+## MobaXterm{#mobaxterm}
11
+MobaXterm is an extended terminal for Windows with SSH client, X11 server, network tools and more.
12
+You can download it from [MobaXterm's website](https://mobaxterm.mobatek.net/). <br>
13
+For how to install, please refer to [Installation of MobaXterm](/install/mobaxterm).
14
+
15
+## HCP Tools{#hcptools}
16
+HCP Tools is a file transfer tool using HpFP protocol. 
17
+You can use it by installing a dedicated package. <br>
18
+For how to install, please refer to [Installation of HCP Tools](/install/hcp_tools).
... ...
@@ -1,5 +1,5 @@
1 1
 ---
2
-title: 'How to Use Network Storage Services'
2
+title: 'Network Storage Services'
3 3
 taxonomy:
4 4
     category:
5 5
         - docs
... ...
@@ -13,15 +13,15 @@ media_order: 'Cyberduck_S3Connect.png,portal_afterlogin.png,WinSCP_FTPinit.png,r
13 13
 
14 14
 [toc]
15 15
 
16
-## Overview
17
-We have started offering a network storage service on a trial basis to expand our research data storage environment and data collection infrastructure from May 2022.
16
+## 概要
17
+We have started offering a network storage service to expand our research data storage environment and data collection infrastructure from May 2022.
18 18
 You can start using the service by following the procedure from [User Portal](https://web.kudpc.kyoto-u.ac.jp/portal).
19
-Please note that the maintenance may be performed and service content may be revised without prior notice during the trial period.
19
+Please note that the maintenance may be performed and service content may be revised without prior notice.
20 20
 
21 21
 ### Examples
22
-*  Research data sharing by storage linkage with [GakuNin RDM](https://rdm.nii.ac.jp/)
23
-*  Data collection for IoT devices, etc. 
24
-*  Back up of the storage of the supercomputer
22
+* Research data sharing by storage linkage with [GakuNin RDM](https://rdm.nii.ac.jp/)
23
+* Data collection for IoT devices, etc. 
24
+* Back up of the storage of the supercomputer
25 25
 
26 26
 ## System Configuration
27 27
 Small network storage cluster connected to a network independent from the supercomputer system.
... ...
@@ -32,16 +32,16 @@ Device | DELL EMC isilon A200 x 4<br>DELL EMC PowerScale F200 x 4
32 32
 Storage capacity | 260TB
33 33
 Front-end network | 5Gbps
34 34
 
35
-##  Services Provided
36
-If you have a user number/account of Large-scale computer system, you can use the following services free of charge.
37
-**<span style="color:red">This service does not back up the user's data by the system administrator.</span>Please take measures such as backups as necessary to prepare for the loss of the registered data when using this service.
38
-**
35
+## Services Provided
36
+If you have a user ID of Large-scale computer system, you can use the following services free of charge.
37
+**<span style="color:red">This service does not back up the user's data by the system administrator.</span>Please make backups as necessary to prepare for the loss of the registered data when using this service.**
39 38
 
40 39
 Item | Content
41 40
 -----| -------
42 41
 Supported protocols |  FTPS and S3 (Amazon S3 compatible, path format)
43 42
 Storage capacity | 100GB
44 43
 Transfer capacity | Unlimited
44
+Backup | None
45 45
 FTP account | 1
46 46
 S3 account | 1
47 47
 Number of S3 Buckets | 1
... ...
@@ -50,7 +50,7 @@ Number of S3 objects | Unlimited
50 50
 Tine zone of Device | UTC
51 51
 
52 52
 ## How to Start
53
-1. Access the [User Portal](https://web.kudpc.kyoto-u.ac.jp/portal)and log in with your user number of Large-scale computer system. 
53
+1. Access the [User Portal](https://web.kudpc.kyoto-u.ac.jp/portal)and log in with your user ID of Large-scale computer system. 
54 54
 2. Click "Network Storage Service" in the left column.
55 55
 ![portal_afterlogin](portal_afterlogin.png)
56 56
 3. Select "Generate (Regenerate)" from the drop-down list surrounded by red when issuing a password used for FTP or blue when issuing a secret key for S3, and agree to the precautions. Then click the "Submit" button. 
... ...
@@ -59,7 +59,7 @@ Tine zone of Device | UTC
59 59
 ![generate_passwd](generate_passwd.png)
60 60
 
61 61
 
62
-## How to Connect (S3)
62
+## How to Connect(S3)
63 63
 #### Connection Information
64 64
 
65 65
 Item|Content
... ...
@@ -74,7 +74,7 @@ Bucket name | Please check the user portal.
74 74
 #### How to Install
75 75
 Please refer to the [Official Manual](https://docs.aws.amazon.com/ja_jp/cli/latest/userguide/getting-started-install.html).
76 76
 The supercomputer system provides module files. Please see [here](../oss#awscli) for details.
77
-#### Initial Setting
77
+####  Initial Setting
78 78
 ```nohighlight
79 79
 $ aws configure --profile kudpc
80 80
 AWS Access Key ID [None]:     ## Enter the access key issued by the User Portal
... ...
@@ -94,7 +94,7 @@ $ aws --profile kudpc --endpoint-url=https://s3.kudpc.kyoto-u.ac.jp s3 ls s3://b
94 94
 ## Upload Files
95 95
 $ aws --profile kudpc --endpoint-url=https://s3.kudpc.kyoto-u.ac.jp s3 cp sample.sh s3://b59999
96 96
 
97
-##Download Files
97
+## Download Files
98 98
 $ aws --profile kudpc --endpoint-url=https://s3.kudpc.kyoto-u.ac.jp s3 cp s3://b59999/sample.sh ./
99 99
 
100 100
 ## Delete files from network storage
... ...
@@ -115,7 +115,7 @@ The supercomputer system can be used without loading the module.
115 115
 $ mkdir ./kudpc-s3
116 116
 
117 117
 ## Create S3 authentication information
118
-$ echo "{accesss key}:{secret key}" > ${HOME}/.passwd-s3fs
118
+$ echo "{accesss key}:secret key}" > ${HOME}/.passwd-s3fs
119 119
 $ chmod 600 ${HOME}/.passwd-s3fs
120 120
 ```
121 121
 
... ...
@@ -144,7 +144,7 @@ Access key ID | S3 access key
144 144
 Secret access key | S3 secret key
145 145
 ![Cyberduck_S3Connect](Cyberduck_S3Connect.png)
146 146
 
147
-## How to Connect (FTP)
147
+## How to Connect(FTP)
148 148
 #### Connection Information
149 149
 Item|Content
150 150
 -------| -----------------------------------
... ...
@@ -160,7 +160,8 @@ Please refer to [Installing WinSCP](../install/winscp).
160 160
 1. Start WinSCP.
161 161
 2. Please enter your session information as shown in the table below and click the "Login" button.    
162 162
  
163
- Item | Content
163
+  
164
+Item | Content
164 165
 -----| ----------
165 166
 Transfer protocol|FTP
166 167
 Encryption|Explicit TLS/SSL encryption
... ...
@@ -169,7 +170,7 @@ Port number|21
169 170
 User name| FTP account name
170 171
 Password|  FTP Password
171 172
 ![WinSCP_FTPinit](WinSCP_FTPinit.png "WinSCP_FTPinit")
172
-1. If successful, the WinSCP screen will be displayed and file transfer will be possible.
173
+3. If successful, the WinSCP screen will be displayed and file transfer will be possible.
173 174
 
174 175
 ### When using Cyberduck
175 176
 #### How to Install
... ...
@@ -188,30 +189,30 @@ User name| FTP account name
188 189
 Password|FTP Password
189 190
 ![Cyberduck_FTPinit](Cyberduck_FTPinit.png "Cyberduck_FTPinit")
190 191
 <!--
191
-### When using FTP commands
192
-#### How to Connect
192
+### FTPコマンドを使用する場合
193
+#### 接続方法
193 194
 ```nohighlight
194
-## Connection
195
+## 接続
195 196
 $ ftp s3.kudpc.kyoto-u.ac.jp
196
-Name (s3.kudpc.kyoto-u.ac.jp:b59999): #Enter FTP account name
197
-Password: #Enter FTP password
197
+Name (s3.kudpc.kyoto-u.ac.jp:b59999): #FTPのアカウント名を入力
198
+Password: #FTPのパスワードを入力
198 199
 ```
199 200
 
200
-#### How to operate the file
201
+#### ファイルの操作方法
201 202
 ```nohighlight
202
-## Obtain a list of files
203
-> ls
203
+## ファイルの一覧を取得
204
+#> ls
204 205
 
205
-## Displays the current directory of the connecting terminal
206
-> lcd
206
+## 接続元端末のカレントディレクトリを表示
207
+#> lcd
207 208
 
208
-## Upload Files
209
-> put sample.sh ./
209
+## ファイルをアップロード
210
+#> put sample.sh ./
210 211
 
211
-## Download Files
212
-> get sample.sh ./
212
+## ファイルをダウンロード
213
+#> get sample.sh ./
213 214
 
214
-## Delete files from network storage
215
-> delete sample.sh
215
+## ファイルをネットワークストレージから削除
216
+#> delete sample.sh
216 217
 ```
217 218
 -->
... ...
@@ -19,7 +19,8 @@ Once you receive the Registration Completion Notice, please follow the Procedure
19 19
 
20 20
 If you have been using our service since the previous year, you are not required to follow these steps.
21 21
 
22
-## Flow of Procedure
22
+
23
+## Flow of the Procedure
23 24
 
24 25
 When you start the service for the first time, please follow the steps below.
25 26
 On this page, we will describe the following 1 to 4 steps with specific images.
... ...
@@ -33,15 +34,17 @@ and the "Approval Notice" with the "Registration Confirmation Notice".
33 34
 3. Open the one-time URL which is sent to your registered email address and download the Approval Notice and set the password.
34 35
 4. After that, you can log in to the user portal by the password authentication (Continuously, please set the public key authentication, etc.)
35 36
 
37
+
36 38
 ## 1. Receiving the Registration Completion Notice
37 39
 
40
+
38 41
 We are sending the following email to notify you of the completion of your registration.
39 42
 Although some expressions are omitted, we will send you an email with both English and Japanese text.
40 43
 The user number described in this email will be used to login to the user portal and the supercomputer.
41 44
 Make sure not to forget the password.
42 45
 
43 46
 ```nohighlight
44
-Subject: [Supercomputer System of Kyoto University] Registration Completion Notice(FY20xx)
47
+Subject: [Supercomputer System of Kyoto University] Registration Completion Notice (FY20xx)
45 48
 From: User Portal of Supercomputer System of Kyoto University
46 49
 --------------------------------------------------------------------------------------------
47 50
 The registration of your supercomputer account has been completed.
... ...
@@ -50,11 +53,11 @@ You can start the service by downloading the Approval Notice and setting the pas
50 53
 User number: b59999
51 54
 
52 55
 URL of the Procedure to Start the Service:
53
-https://web.kudpc.kyoto-u.ac.jp/portal/..."omitted"
56
+https://web.kudpc.kyoto-u.ac.jp/portal/...omitted
54 57
 
55 58
 If you publish a paper or other publication of the research results which you have obtained using our supercomputer, 
56 59
 please report it in the manner described at the following URL.
57
-http://www.iimc.kyoto-u.ac.jp/ja/services/comp/apply/report.html
60
+http://www.iimc.kyoto-u.ac.jp/en/services/comp/apply/report.html
58 61
 
59 62
 Supercomputer System User's Guide
60 63
 https://web.kudpc.kyoto-u.ac.jp/manual/en
... ...
@@ -64,15 +67,16 @@ Academic Center for Computing and Media Studies, Kyoto University
64 67
 Supercomputer Systems
65 68
 ```
66 69
 
70
+
67 71
 ## 2. Request for  the Procedure to Start the Service
68 72
 
69 73
 ### Access to the User Portal
70 74
 
71
-Start up your web browser and access the URL described in the email of the registration confirmation notice.
75
+Start up your web browser and access the URL described in the email of the Registration Completion Notice.
72 76
 Or, from the top page of the User Portal ([https://web.kudpc.kyoto-u.ac.jp/portal/](https://web.kudpc.kyoto-u.ac.jp/portal/)), 
73 77
 click on the "Procedure to Start the Service" button circled by the red square in the following image.
74 78
 
75
-! [](portal-init-01.png?lightbox=100%&resize=400)
79
+![](portal-init-01.png?lightbox=100%&resize=400)
76 80
 
77 81
 ### Request for the Procedure to Start the Service
78 82
 
... ...
@@ -92,6 +96,7 @@ If you have a problem with your registered email address, please contact our off
92 96
 We will notify you of the URL containing a unique long string of characters as follows.
93 97
 The URL is valid for one hour, so if it expires, please repeat the above procedure.
94 98
 
99
+
95 100
 ```nohighlight
96 101
 Subject: [Supercomputer System of Kyoto University] Procedure to Start the Service
97 102
 From: User Portal of Supercomputer System of Kyoto University
... ...
@@ -105,15 +110,15 @@ Necessary procedure
105 110
 ・ Password setting
106 111
 
107 112
 [URL]
108
-https: //web.kudpc.kyoto-u.ac.jp/portal / ... "omitted" ... / c2cxwupu6jobyn ... "omitted"
113
+https://web.kudpc.kyoto-u.ac.jp/portal/...omitted.../c2cxwupu6jobyn...omitted
109 114
 * The URL is valid for 1 hour.
110
-* If you get an error when connecting, please apply again.
115
+* If you get an error when connecting, please apply for again.
111 116
 
112
--
117
+--
113 118
 Academic Center for Computing and Media Studies, Kyoto University.
114 119
 Supercomputer system
115 120
 User portal
116
-`````
121
+```
117 122
 
118 123
 ## 3. Procedure to Start the Service
119 124
 
... ...
@@ -145,12 +150,11 @@ Once the password setting is completed, the following screen will be displayed.
145 150
 After that, you can log in to the user portal using your user number and the registered password.
146 151
 In the User Portal, you can register your public key which is used in the supercomputer.
147 152
 
153
+
148 154
 ![](portal-init-05.png?lightbox=100%&resize=400)
149 155
 
150
-## 4. Access to the supercomputer
156
+## 4.Access to the supercomputer
151 157
 
152 158
 Please refer to the following pages to access to your supercomputer.
153 159
 
154 160
 [Access](../../login)
155
-
156
-
... ...
@@ -12,8 +12,6 @@ external_links:
12 12
     mode: active
13 13
 ---
14 14
 
15
-
16
-
17 15
 [toc]
18 16
 
19 17
 スーパーコンピュータの利用者番号の発行が完了したら、Eメールにて登録完了通知を送付いたします。
20 18
new file mode 100644
... ...
@@ -0,0 +1,15 @@
1
+---
2
+title: 'Activation of the seminar ID'
3
+published: true
4
+login:
5
+    visibility_requires_access: false
6
+media_order: short_course_login.mov
7
+---
8
+
9
+### Activation of  the seminar ID
10
+You must activate your seminar ID at [https://web.kudpc.kyoto-u.ac.jp/portal/guest/short_course_activation](https://web.kudpc.kyoto-u.ac.jp/portal/guest/short_course_activation)  <br>
11
+To issue and activate your seminar ID, you will need the **"verification code "** that you will receive in the chat when you attend a seminar (Zoom Webiner). <br>
12
+※ We recommend **Google Chrome** for your web browser.
13
+
14
+### How to activate the seminar ID and log in to the system (video manual)
15
+![short_course_login](short_course_login.mov?resize=960)
0 16
\ No newline at end of file