We provide well-known packages and libraries except those in the Linux distributions. We also distribute software sources and environments of Configure and Make to provide the know-how of how to make various packages. If you have any suggestions or comments, please feel free to contact to our programming support desk. Please also tell us if you require software that is not listed below. Their usage conditions are in accordance with individual software conditions. For more information about using the Migrated Software, please refer to the manual of each software.
Key:
+ = Available for all users.
― = Not available for use.
version | Module File | SystemA | SystemB,C |
---|---|---|---|
8.10.1 | abinit/8.10.1_intel-17.0 | + | ― |
8.10.1 | abinit/8.10.1_intel-17.0-impi-2017.4 | ― | + |
8.6.3 | abinit/8.6.3_intel-17.0 | + | ― |
8.6.3 | abinit/8.6.3_intel-17.0-impi-2017.2 | ― | + |
/opt/app/abinit
Please contact us if you want to use this software.
Please make sure to acknowledge the use of this software in papers when publishing research achievements obtained from the use of this software.
“Electron-correlated fragment-molecular-orbital
calculations for biomolecular and nano systems”, S.
Tanaka, Y. Mochizuki, Y. Komeiji, Y. Okiyama, K.
Fukuzawa, Phys. Chem. Chem. Phys. 16 (2014) 10310-10344.
anaconda version | python version | Module File | SystemA | SystemB,C |
---|---|---|---|---|
2/4.2.0 | 2.7.12 | anaconda2/4.2.0 | + | + |
2/5.1.0 | 2.7.14 | anaconda2/5.1.0 | + | + |
2/5.1.0-intel | 2.7.14 | anaconda2/5.1.0-intel | + | + |
3/4.2.0 | 3.5.2 | anaconda3/4.2.0 | + | + |
3/5.0.1 | 3.6.3 | anaconda3/5.0.1 | + | + |
3/5.0.1-intel | 3.6.2 | anaconda3/5.0.1-intel | + | + |
3/5.1.0 | 3.6.4 | anaconda3/5.1.0 | + | + |
3/5.1.0-intel | 3.6.3 | anaconda3/5.1.0-intel | + | + |
3/5.3.1 | 3.6.7 | anaconda3/5.3.1 | + | + |
3/2019.10 | 3.7.4 | anaconda3/2019.10 | + | + |
3/2020.11 | 3.8.5 | anaconda3/2020.11 | + | + |
3/2021.11.1 | 3.9.13 | anaconda3/2021.11.1 | + | + |
/opt/app/anaconda2
/opt/app/anaconda3
TensorFlow is available, which is installed as a plugin.
version | Module File | SystemA | SystemB,C |
---|---|---|---|
96 | arpack/96_cray-8.5 | + | + |
" | arpack/96_intel-16.0 | + | + |
" | arpack/96_gnu-6.1 | + | ― |
/opt/app/arpack
version | Module File | SystemA | SystemB,C |
---|---|---|---|
2.4.28 | awscli/2.4.28 | + | + |
/opt/app/awscli
version | Module File | SystemA | SystemB,C |
---|---|---|---|
1.2.5 | boltztrap/1.2.5_intel-17.0-impi-2017.4 | ― | + |
/opt/app/boltztrap
version | Module File | SystemA | SystemB,C |
---|---|---|---|
18.5.1 | boltztrap2/18.5.1_gnu-7.1-cray-python-17.06.1 | + | ― |
18.5.1 | boltztrap2/18.5.1_intel-17.0-intel-python-3.5.3 | ― | + |
/opt/app/boltztrap2
This software is a site package of Python. This module loads cray python 17.06.1 on system A, or intel disribution python 3.5.3 on system B/C at the same time.
version | Module File | SystemA | SystemB,C |
---|---|---|---|
3.23.1 | cmake/3.23.1 | + | + |
3.22.2 | cmake/3.22.2 | ― | + |
3.20.6 | cmake/3.20.6 | ― | + |
3.13.2 | cmake/3.13.2 | ― | + |
3.7.1 | cmake/3.7.1 | ― | + |
/opt/app/cmake
In System A, CMAKE 3.5.2 is available, no module needed.
version | Module File | SystemA | SystemB,C |
---|---|---|---|
8.1 | cp2k/8.1.0_gnu-8.1.0-impi-2018.4 | - | + |
8.1 | cp2k/8.1.0_intel-18.0.5-impi-2018.4 | - | + |
/opt/app/cp2k
Version | Module File | System A | System B,C |
---|---|---|---|
2.7.15.6 | cray-python/2.7.15.6 | + | ― |
2.7.15.3 | cray-python/2.7.15.3 | + | ― |
2.7.13.1 | cray-python/2.7.13.1 | + | ― |
Version | Module File | System A | System B,C |
---|---|---|---|
3.6.5.6 | cray-python/3.6.5.6 | + | ― |
3.6.5.3 | cray-python/3.6.5.3 | + | ― |
3.6.1.1 | cray-python/3.6.1.1 | + | ― |
Version | Module File | System A | System B,C |
---|---|---|---|
17.06.1 | cray-python/17.06.1 | + | ― |
17.09.1 | cray-python/17.09.1 | + | ― |
/opt/python
Version | Module File | System A | System B,C |
---|---|---|---|
3.4.2 | cray-R/3.4.2 | + | ― |
3.3.3 | cray-R/3.3.3 | + | ― |
/opt/R
Version | Module File | SystemA | SystemB,C |
---|---|---|---|
6.7.1 | fds/6.7.1-18.0-impi-2018.4 | ― | + |
6.5.3 | fds/6.5.3-18.0-impi-2018.4 | ― | + |
/opt/app/fds
FFTE: A Fast Fourier Transform Package
Version | Module File | System A | System B,C |
---|---|---|---|
6.0 | ffte/6.0_cray-8.5 | + | ― |
6.0 | ffte/6.0_intel-17.0-impi-2017.2 | ― | + |
/opt/app/ffte
version | Module File | SystemA | SystemB,C |
---|---|---|---|
2.1.5.9 | fftw/2.1.5.9 | + | ― |
version | Module File | SystemA | SystemB,C |
---|---|---|---|
3.3.8.3 | cray-fftw/3.3.8.3 | + | ― |
3.3.8.2 | cray-fftw/3.3.8.2 | + | ― |
3.3.8.1 | cray-fftw/3.3.8.1 | + | ― |
3.3.6.3 | cray-fftw/3.3.6.3 | + | ― |
3.3.6.2 | cray-fftw/3.3.6.2 | + | ― |
3.3.5 | fftw/3.3.5_intel-17.0-impi-2017.1 | ― | + |
3.3.4.11 | fftw/3.3.4.11 | + | ― |
3.3.4.10 | fftw/3.3.4.10 | + | ― |
3.3.4.9 | fftw/3.3.4.9 | + | ― |
3.3.4.7 | fftw/3.3.4.7 | + | ― |
3.3.4 | fftw/3.3.4_intel-17.0-impi-2017.1 | ― | + |
version | Module File | SystemA | SystemB,C |
---|---|---|---|
3.3.4 | fftwl/3.3.4_intel-17.0 fftwl/3.3.4_gnu-6.3 |
+ | ― |
System A
/opt/cray/pe/fftw
System B,C
/opt/app/fftw
Please contact us if you want to use this software.
version | Module File | SystemA | SystemB,C |
---|---|---|---|
8.1 | frontflow_blue/8.1_intel-18.0 | + | ― |
/opt/app/frontflow_blue
Those who want to use this software must observe the following conditions. (write acknowledgments in your paper, etc.)
http://www.ciss.iis.u-tokyo.ac.jp/dl/download/permission.php?group_id=7
Please contact us if you want to use this software.
Those who want to use this software must observe the following conditions. (write acknowledgments in your paper, etc.)
http://www.ciss.iis.u-tokyo.ac.jp/dl/download/permission.php?group_id=7
vesion | Module File | Sydtem A | SystemB,C |
---|---|---|---|
5.1.1 | frontistr/5.1.1_intel-18.0 | + | ― |
5.0b | frontistr/5.0b_intel-18.0 | + | ― |
/opt/app/frontistr
Gordon Group / GAMESS Homepage
version | Module File | SystemA | SystemB,C |
---|---|---|---|
2016_r1 | gamess/2016R1_intel-17.0-impi-2017.1 | ― | + |
2014_r1 | gamess/2014R1_cray-8.5 gamess/2014R1_intel-16.0 |
+ | ― |
2014_r1 | gamess/2014R1_intel-16.0-impi-5.1 | ― | + |
/opt/app/gamess
version | Module File | SystemA | SystemB,C |
---|---|---|---|
3.0.3 | gdal/3.0.3_gnu-8.1 | ― | + |
2.4.4 | gdal/2.4.4_gnu-8.1 | ― | + |
/opt/app/gdal
version | モジュールファイル名 | システムA | システムB,C |
---|---|---|---|
1.5.1 | genesis/1.5.1_intel-18.0 | + | ― |
1.3.0 | genesis/1.3.0_intel-18.0 | + | ― |
/opt/app/genesis
$ git
version | Module File | SystemA | SystemB,C |
---|---|---|---|
2.27 | git/2.27_gnu-4.8 | ― | + |
/opt/app/git
In system A, you can use a recent git by default, don't need to load a module.
version | Module File | SystemA | SystemB,C |
---|---|---|---|
5.4.1 | gmt5/5.4.1_intel-17.0 | + | ― |
5.4.1 | gmt5/5.4.1_intel-17.0-impi-2017.2 | ― | + |
4.5.13 | gmt4/4.5.13_gnu-5.3 | + | ― |
/opt/app/gmt
On system A, when you use GMT by batch job, please add -q option to aprun command in the job script.
Example:
#!/bin/bash
#QSUB -q gr19999a
#QSUB -ug gr19999
#QSUB -A p=1:t=1:c=1:m=1355M
aprun -q -n $QSUB_PROCS -d $QSUB_THREADS -N $QSUB_PPN gmt psbasemap -R0/6.5/0/7.5 -Jx1i -B0 -P -K > out.ps
version | Module File | SystemA | SystemB,C |
---|---|---|---|
5.0.4 | gnuplot/5.0.4 | + | + |
/opt/app/gnuplot
Version | Module File | System A | System B,C |
---|---|---|---|
5.1.25 | grace/5.1.25_gnu-4.8 | ― | + |
/opt/app/grace
version | Module File | SystemA | SystemB,C |
---|---|---|---|
2.2.0 | grads/2.2.0_intel-18.0-impi-2018.0 | ― | + |
2.2.0 | grads/2.2.0 | + | ― |
2.0.2 | grads/2.0.2_intel-17.0-impi-2017.2 | ― | + |
2.0.2 | grads/2.0.2_gnu-5.3 | + | ― |
/opt/app/grads
version | Module File | SystemA | SystemB,C |
---|---|---|---|
2016.4 | gromacs/2016.4_intel-17.0-impi-2017.2 | ― | + |
2016.4 | gromacs/2016.4_intel-17.0 | + | ― |
/opt/app/gromacs
Version | Module File | SystemA | SystemB,C |
---|---|---|---|
4.2.13 | hdf4/4.2.13 | + | ― |
/opt/app/hdf4
Version | Module File | SystemA | SystemB,C |
---|---|---|---|
1.10.5.1 | cray-hdf5/1.10.5.1 | + | ― |
1.10.2.0 | cray-hdf5/1.10.2.0 | + | ― |
1.10.1.1 | cray-hdf5/1.10.1.1 | + | ― |
1.10.0.3 | cray-hdf5/1.10.0.3 | + | ― |
1.10.0.1 | cray-hdf5/1.10.0.1 | + | ― |
1.10.0 | cray-hdf5/1.10.0 | + | ― |
1.10.0 | hdf5/1.10.0_intel-17.0 hdf5/1.10.0_gnu-4.8 |
― | + |
1.8.17 | hdf5/1.8.17_intel-16.0 hdf5/1.8.17_cray-8.5 hdf5/1.8.17_gnu-4.8 |
― | + |
1.8.16 | cray-hdf5/1.8.16 | + | ― |
Version | Module File | SystemA | SystemB,C |
---|---|---|---|
1.10.5.1 parallel | cray-hdf5-parallel/1.10.5.1 | + | ― |
1.10.2.0 parallel | cray-hdf5-parallel/1.10.2.0 | + | ― |
1.10.1.1 parallel | cray-hdf5-parallel/1.10.1.1 | + | ― |
1.10.0.3 parallel | cray-hdf5-parallel/1.10.0.3 | + | ― |
1.10.0.1 parallel | cray-hdf5-parallel/1.10.0.1 | + | ― |
1.10.0 parallel | cray-hdf5-parallel/1.10.0 | + | ― |
1.10.0 parallel | hdf5-parallel/1.10.0_intel-17.0-impi-2017.1 | ― | + |
1.8.17 parallel | hdf5-parallel/1.8.17_intel-17.0-impi-2017.1 hdf5-parallel/1.8.17_cray-8.5-impi-5.1 |
― | + |
1.8.16 parallel | cray-hdf5-parallel/1.8.16 | + | ― |
System A
/opt/cray/pe/hdf5
/opt/cray/pe/hdf5-parallel
System B,C
/opt/app/hdf5
/opt/app/hdf5-parallel
HYPRE: Scalable Linear Solvers and Multigrid Methods
Version | Module File | System A | System B,C |
---|---|---|---|
2.14 | cray-tpsl/19.06.1 | + | ― |
2.11 | cray-tpsl/18.06.1 | + | ― |
― | cray-tpsl/17.11.1 | + | ― |
― | cray-tpsl/16.12.1 | + | ― |
2.11.1 | hypre/2.11.1_intel-17.0-impi-2017.2 | ― | + |
System A
/opt/cray/pe/tpsl
System B,C
/opt/app/hypre
Hφ: Quantum Lattice Model Simulator Package
Version | Module File | System A | System B,C |
---|---|---|---|
3.4.0 | hphi/3.4.0_intel-18.0 | + | ― |
3.1.2 | hphi/3.1.2_intel-17.0 | + | ― |
/opt/app/hphi
version | Module File | SystemA | SystemB,C |
---|---|---|---|
3.5.3 | intel-python/3.5.3_2017.3 | ― | + |
2.7.13 | intel-python/2.7.13_2017.3 | ― | + |
/opt/app/intel/intelpython
Version | Module File | SystemA | SystemB,C |
---|---|---|---|
1.2.0 | julia/1.2.0 | + | + |
1.0.1 | julia/1.0.1 | + | + |
In system A, Julia is available by batch job execution. In the batch job script, execute a shell script by aprun, then execute julia in the shell script. The source code to be run by Julia must be input by redirection.
$ cat jobscript.sh
#!/bin/bash
#QSUB -q gr19999a
#QSUB -ug gr19999
aprun -b sh source.sh
$ cat source.sh
#!/bin/bash
julia < hello-world.jl
$ qsub jobscript.sh
/opt/app/julia
LAMMPS Molecular Dynamics Simulator
Version | Module File | SystemA | SystemB,C |
---|---|---|---|
7Aug19 | lammps/7Aug19_intel-18.0 | + | + |
22Aug18 | lammps/22Aug18_intel-17.0 | + | + |
11Aug17 | lammps/11Aug17_intel-18.0 | + | + |
17Nov16 | lammps/17Nov16_intel-17.0 | + | ― |
/opt/app/lammps
Lis: Library of Iterative Solvers for Linear Systems
Version | Module File | System A | System B,C |
---|---|---|---|
2.0.4 | lis/2.0.4_intel-18.0 | + | ― |
2.0.4 | lis/2.0.4_intel-18.0-impi-2018.0 | ― | + |
1.7.27 | lis/1.7.27_intel-17.0 lis/1.7.27_cray-8.5 |
+ | ― |
1.7.27 | lis/1.7.27_intel-17.0-impi-2017.2 | ― | + |
/opt/app/lis
version | Module File | SystemA | SystemB,C |
---|---|---|---|
1.3 | meep/1.3_intel-17.0 | ― | + |
" | meep/1.3_intel-16.0 | + | ― |
" | meep/1.3_gnu-6.1 | + | ― |
" | meep/1.3_gnu-4.8 | ― | + |
/opt/app/meep
Version | Module File | System A | System B,C |
---|---|---|---|
0.44 | meson/0.44.0 | + | ― |
/opt/app/meson
When running meson on the login node of system A, the following error occurs.
Meson encountered an error in file meson.build, line 1, column 0:
Executables created by c compiler cc are not runnable.
To avoid the error, please run meson on the computing node (adding tssrun before meson command, for example).
METIS - Serial Graph Partitioning and Fill-reducing Matrix Ordering
Version | Module File | System A | System B,C |
---|---|---|---|
5.1.0 | cray-tpsl/18.06.1 | + | ― |
― | cray-tpsl/17.11.1 | + | ― |
― | cray-tpsl/16.12.1 | + | ― |
5.1.0 | metis/5.1.0_intel-17.0-impi-2017.2 | ― | + |
System A
/opt/cray/pe/tpsl
System B,C
/opt/app/metis
Version | Module File | SystemA | SystemB,C |
---|---|---|---|
3.3.2 | MRO/3.3.2_gnu-4.8 | ― | + |
/opt/app/mro
MODYLAS: MOlecular DYnamics software for LArge System
Version | Module File | System A | System B,C |
---|---|---|---|
1.1.0b | modylas/1.1.0b_intel-18.0 | + | ― |
1.0.4 | modylas/1.0.4_intel-17.0 | + | ― |
/opt/app/modylas
Observe the licence agreement.
http://www.modylas.org/system/files/MODYLAS_ReferenceManual_v1.0.2_Japanese.pdf
MUMPS : a parallel sparse direct solver
Version | Module File | System A | System B,C |
---|---|---|---|
5.2.0 | cray-tpsl/19.06.1 | + | ― |
5.1.1 | cray-tpsl/18.06.1 | + | ― |
― | cray-tpsl/17.11.1 | + | ― |
― | cray-tpsl/16.12.1 | + | ― |
5.0.2 | mumps/5.0.2_intel-17.0-impi-2017.2 | ― | + |
System A
/opt/cray/pe/tpsl
System B,C
/opt/app/mumps
version | Module File | SystemA | SystemB,C |
---|---|---|---|
2.14 beta2 | namd/2.14b2_intel-18.0-impi-2018.4 | ― | + |
2.11 | namd/2.11_intel-16.0 | + | + |
/opt/app/namd
version | Module File | SystemA | SystemB,C |
---|---|---|---|
6.4.0 | ncl/6.4.0 | ― | + |
/opt/app/ncl
-->
version | Module File | SystemA | SystemB,C |
---|---|---|---|
4.6.3.1 | cray-netcdf/4.6.3.1 | + | ― |
4.6.1.3 | cray-netcdf/4.6.1.3 | + | ― |
4.4.1.1.6 | cray-netcdf/4.4.1.1.6 | + | ― |
4.4.1.1.3 | cray-netcdf/4.4.1.1.3 | + | ― |
4.4.1.1 | cray-netcdf/4.4.1.1 | + | ― |
4.4.1 | cray-netcdf/4.4.1 | + | ― |
4.4.0 | cray-netcdf/4.4.0 | + | ― |
4.4.0 | netcdf/4.4.0_intel-17.0 netcdf/4.4.0_gnu-4.8 |
― | + |
4.1.3 | netcdf/4.1.3_intel-16.0 netcdf/4.1.3_cray-8.5 netcdf/4.1.3_gnu-4.8 |
― | + |
version | Module File | SystemA | SystemB,C |
---|---|---|---|
4.6.3.1 | cray-netcdf-hdf5parallel/4.6.3.1 | + | ― |
4.6.1.3 | cray-netcdf-hdf5parallel/4.6.1.3 | + | ― |
4.4.1.1.6 | cray-netcdf-hdf5parallel/4.4.1.1.6 | + | ― |
4.4.1.1.3 | cray-netcdf-hdf5parallel/4.4.1.1.3 | + | ― |
4.4.1.1 | cray-netcdf-hdf5parallel/4.4.1.1 | + | ― |
4.4.1 | cray-netcdf-hdf5parallel/4.4.1 | + | ― |
4.4.0 | cray-netcdf-hdf5parallel/4.4.0 | + | ― |
4.1.3 | netcdf-parallel/4.1.3_intel-17.0 netcdf-parallel/4.1.3_cray-8.5 |
― | + |
System A
/opt/cray/pe/netcdf
/opt/cray/pe/netcdf-hdf5parallel
System B,C
/opt/app/netcdf
/opt/app/netcdf-hdf5parallel
Version | Module File | System A | System B,C |
---|---|---|---|
1.8.2 | ninja/1.8.2 | + | ― |
/opt/app/ninja
Version | Module File | System A | System B,C |
---|---|---|---|
2013-12.1 | ntchem/2013-12.1_intel-19.3 | ― | + |
2013-11.1 | ntchem/2013-11.1_intel-18.0 | + | ― |
2013-10.1 | ntchem/2013-10.1_intel-17.0 | + | ― |
/opt/app/ntchem
Observe the licence agreement.
http://molsc.riken.jp/ntchem2013_manual.pdf
Version | Module File | SystemA | SystemB,C |
---|---|---|---|
6.6 | nwchem/6.6_intel-17.0 | + | ― |
6.5 | nwchem/6.5_intel-17.0-impi-2017.1 | ― | + |
/opt/app/nwchem
version | Module File | SystemA | SystemB,C |
---|---|---|---|
3.1.0 | opencv/3.1.0_gnu-4.8 | + | ― |
2.4.13 | opencv/2.4.13_intel-16.0 | ― | + |
2.4.13 | opencv/2.4.13_gnu-5.3 | + | ― |
/opt/app/opencv
version | Module File | SystemA | SystemB,C |
---|---|---|---|
5.0 | openfoam/5.0_intel-17.0-impi-2017.4 | ― | + |
4.0 | openfoam/4.0_intel-16.0-impi-5.1 | ― | + |
4.0 | openfoam/4.0_gnu-6.1 | + | ― |
2.3 | openfoam/2.3.1_gnu-4.8-openmpi-2.0 | ― | + |
/opt/app/openfoam
When you run the execution script “Allrun” by using the sample program for the tutorial, modify the Allrun script if it includes MPI, as described below.
When running in interactive mode. Modify the Allrun script as shown below, and run ./Allrun directly.
(Before modifying)
# Source tutorial run functions
. $WM_PROJECT_DIR/bin/tools/RunFunctions
(After modifying)
# Source tutorial run functions
. $WM_PROJECT_DIR/bin/tools/RunFunctions.tssrun
When running in batch mode. Modify the Allrun script as shown below, and run ./Allrun in the job script.
(Before modifying)
# Source tutorial run functions
. $WM_PROJECT_DIR/bin/tools/RunFunctions
(After modifying)
# Source tutorial run functions
. $WM_PROJECT_DIR/bin/tools/RunFunctions.impi
OpenFOAM The open source CFD toolbox
Version | Module File | SystemA | SystemB,C |
---|---|---|---|
v2106 | openfoam.com/v2106_gnu-4.8-impi-2018.4 | ― | + |
v2006 | openfoam.com/v2006_gnu-4.8-impi-2018.4 | ― | + |
v1812 | openfoam.com/v1812_intel-17.0 | + | ― |
v1812 | openfoam.com/v1812_intel-17.0-impi-2017.4 | ― | + |
v1712 | openfoam.com/v1712_intel-17.0 | + | ― |
v1712 | openfoam.com/v1712_intel-17.0-impi-2017.4 | ― | + |
NOTE: Paraview in system A doesn't work. Paraview in v1812 doesn't work. NOTE: When using version v1812 or later, it is necessary to load the paraview module.
/opt/app/openfoam.com
version | Module File | SystemA | SystemB,C |
---|---|---|---|
3.9.2 | openmx/3.9.2_intel-18.0 | + | ― |
3.8.5 | openmx/3.8.5_intel-17.0 | + | ― |
3.8 | openmx/3.8_intel-17.0-impi-2017.4 | ― | + |
/opt/app/openmx
Paraview - Open Source Scientific Visualization
version | Module File | SystemA | SystemB,C |
---|---|---|---|
5.9.0 | paraview/5.9.0 | ― | + |
5.5.2 | paraview/5.5.2 | ― | + |
5.1.2 | paraview/5.1.2 | ― | + |
/opt/app/paraview
METIS - Serial Graph Partitioning and Fill-reducing Matrix Ordering
Version | Module File | System A | System B,C |
---|---|---|---|
4.0.2 | cray-tpsl/18.06.1 | + | ― |
― | cray-tpsl/17.11.1 | + | ― |
― | cray-tpsl/16.12.1 | + | ― |
4.0.3 | parmetis/4.0.3_intel-17.0-impi-2017.2 | ― | + |
System A
/opt/cray/pe/tpsl
System B,C
/opt/app/parmetis
version | Module File | SystemA | SystemB,C |
---|---|---|---|
3.11.2.0 | cray-petsc/3.11.2.0 | + | ― |
3.9.3.0 | cray-petsc/3.9.3.0 | + | ― |
3.8.4.0 | cray-petsc/3.8.4.0 | + | ― |
3.7.6.2 | cray-petsc/3.7.6.2 | + | ― |
3.7.6.0 | cray-petsc/3.7.6.0 | + | ― |
3.7.4.0 | cray-petsc/3.7.4.0 | + | ― |
3.7.4 | petsc/3.7.4_intel-17.0-impi-2017.1 petsc/3.7.4_gnu-4.8 |
― | + |
3.7.2.1 | cray-petsc/3.7.2.1 | + | ― |
3.7.2.0 | cray-petsc/3.7.2.0 | + | ― |
3.7.2 | petsc/3.7.2_intel-16.0 petsc/3.7.2_gnu-4.8 |
― | + |
3.6.3.0 | cray-petsc/3.6.3.0 | + | ― |
version | Module File | SystemA | SystemB,C |
---|---|---|---|
3.11.2.0 | cray-petsc-64/3.11.2.0 | + | ― |
3.9.3.0 | cray-petsc-64/3.9.3.0 | + | ― |
3.8.4.0 | cray-petsc-64/3.8.4.0 | + | ― |
3.7.6.2 | cray-petsc-64/3.7.6.2 | + | ― |
3.7.6.0 | cray-petsc-64/3.7.6.0 | + | ― |
3.7.4.0 | cray-petsc-64/3.7.4.0 | + | ― |
3.7.2.1 | cray-petsc-64/3.7.2.1 | + | ― |
3.7.2.0 | cray-petsc-64/3.7.2.0 | + | ― |
3.6.3.0 | cray-petsc-64/3.6.3.0 | + | ― |
version | Module File | SystemA | SystemB,C |
---|---|---|---|
3.11.2.0 | cray-petsc-complex/3.11.2.0 | + | ― |
3.9.3.0 | cray-petsc-complex/3.9.3.0 | + | ― |
3.8.4.0 | cray-petsc-complex/3.8.4.0 | + | ― |
3.7.6.2 | cray-petsc-complex/3.7.6.2 | + | ― |
3.7.6.0 | cray-petsc-complex/3.7.6.0 | + | ― |
3.7.4.0 | cray-petsc-complex/3.7.4.0 | + | ― |
3.7.4 | petsc-complex/3.7.4_intel-17.0-impi-2017.1 | ― | + |
3.7.2.1 | cray-petsc-complex/3.7.2.1 | + | ― |
3.7.2.0 | cray-petsc-complex/3.7.2.0 | + | ― |
3.7.2 | petsc-complex/3.7.2_intel-17.0-impi-2017.1 | ― | + |
3.6.3.0 | cray-petsc-complex/3.6.3.0 | + | ― |
version | Module File | SystemA | SystemB,C |
---|---|---|---|
3.11.2.0 | cray-petsc-complex-64/3.11.2.0 | + | ― |
3.9.3.0 | cray-petsc-complex-64/3.9.3.0 | + | ― |
3.8.4.0 | cray-petsc-complex-64/3.8.4.0 | + | ― |
3.7.6.2 | cray-petsc-complex-64/3.7.6.2 | + | ― |
3.7.6.0 | cray-petsc-complex-64/3.7.6.0 | + | ― |
3.7.4.0 | cray-petsc-complex-64/3.7.4.0 | + | ― |
3.7.2.1 | cray-petsc-complex-64/3.7.2.1 | + | ― |
3.7.2.0 | cray-petsc-complex-64/3.7.2.0 | + | ― |
3.6.3.0 | cray-petsc-complex-64/3.6.3.0 | + | ― |
System A
/opt/cray/pe/petsc
/opt/cray/pe/petsc-complex
System B,C
/opt/app/petsc
/opt/app/petsc-complex
Please contact us if you want to use this software.
Those who want to use this software must observe the following conditions. (write acknowledgments in your paper, etc.) https://azuma.nims.go.jp/cms1/downloads/software
version | Module File | SystemA | SystemB,C |
---|---|---|---|
5.13.0 | plplot/5.13.0_intel-17.0 | ― | + |
5.11.1 | plplot/5.11.1_gnu-4.8 | ― | + |
/opt/app/plplot
PSI4 - OpenSource Quantum Chemistry
バージョン | モジュールファイル名 | システムA | システムB,C |
---|---|---|---|
1.1 | psi4/1.1 | ― | + |
/opt/app/psi4
The following four Python language are available for use on the ACCMS supercomputer.
See Anaconda
$ python
See Cray Python
$ python
$ python
version | SystemA | SystemB,C |
---|---|---|
2.7.13 | + | - |
2.7.5 | - | + |
$ python
/usr/bin/python
Users can install arbitrary packages with pip, the Python package management tool.
# How to install
pip install {Package name} --user
e.g. To install tensorflow
pip install tensorflow --user
# How to uninstall
pip uninstall {Package名} --user
e.g. To uninstall tensorflow
pip uninstall tensorflow --user
pip search {Word or phrase to search for.}
e.g. To find tensorflow
pip search tensorflow
pip list
Version | Module File | SystemA | SystemB,C |
---|---|---|---|
6.3 | qe/6.3_intel-17.0-impi-2017.4 | ― | + |
6.3 | qe/6.3_intel-17.0 | + | ― |
6.1 | qe/6.1_intel-18.0-impi-2018.0 | ― | + |
6.1 | qe/6.1_intel-17.0 | + | ― |
/opt/app/qe
The R Project for Statistical Computing
version | Module File | SystemA | SystemB,C |
---|---|---|---|
4.1.0 | R/4.1.0_intel-18.0 | + | + |
4.0.2 | R/4.0.2_gnu-4.8 | ― | + |
3.6.2 | R/3.6.2_intel-18.0 | + | ― |
3.6.2 | R/3.6.2_gnu-4.8 | ― | + |
3.5.3 | R/3.5.3_intel-18.0 | + | ― |
3.4.1 | R/3.4.1_gnu-4.8 | ― | + |
3.3.1 | R/3.3.1_intel-16.0 | + | ― |
3.3.1 | R/3.3.1_gnu-4.8 | ― | + |
/opt/app/R
RStudio – Open source and enterprise-ready professional software for R
version | Module File | SystemA | SystemB,C |
---|---|---|---|
1.0 | rstudio/1.0.136 | ― | + |
0.98 | rstudio/0.98.1091 | ― | + |
* Currently the version 1.0 has a problem that the keyboard mapping becomes scrumbled on Exceed onDemand.
/opt/app/rstudio
[SALMON (Scalable Ab-initio Light-Matter simulator for Optics an D Nanoscience)](http://salmon-tddft.jp/jp/in Dex.html)
Version | Module File | System A | System B,C |
---|---|---|---|
2.0.0 | salmon/2.0.0_intel-18.0 | + | ― |
1.2.1 | salmon/1.2.1_intel-18.0 | + | ― |
1.2.0 | salmon/1.2.0_intel-17.0 | + | ― |
/opt/app/salmon
version | Module File | SystemA | SystemB,C |
---|---|---|---|
2.5 | sals/2.5_cray-8.5 | + | ― |
" | sals/2.5_intel-16.0 | + | + |
" | sals/2.5_gnu-6.1 | + | ― |
" | sals/2.5_gnu-4.8 | ― | + |
/opt/app/sals
$ ifort main.f $SALS_SLIB_D (Static link library in double precision)
$ ifort main.f $SALS_SLIB_S (Static link library in single precision)
$ ifort main.f $SALS_DLIB_D (Dynamic link library in double precision)
$ ifort main.f $SALS_DLIB_S (Dynamic link library in single precision)
When you publish a printed report of a research that uses SALS, you need to include the program name SALS and the name of the author in the report. Copying an installed SALS and giving it to a third party is not allowed.
Version | Module File | System A | System B,C |
---|---|---|---|
6.0.6 | cray-tpsl/19.06.1 | + | ― |
6.0.4 | cray-tpsl/18.06.1 | + | ― |
― | cray-tpsl/17.11.1 | + | ― |
― | cray-tpsl/16.12.1 | + | ― |
6.0.4 | scotch/6.0.4_intel-17.0-impi-2017.2 | ― | + |
System A
/opt/cray/pe/tpsl
System B,C
/opt/app/scotch
Version | Module File | System A | System B,C |
---|---|---|---|
3.6.2 | singularity/3.6.2 | ― | + |
/opt/app/singurality
version | Module File | SystemA | SystemB,C |
---|---|---|---|
3.7.4 | slepc/3.7.4_intel-17.0 | + | ― |
3.7.4 | slepc/3.7.4_intel-17.0-impi-2017.2 | ― | + |
3.7.4-complex | slepc-complex/3.7.4_intel-17.0 | + | ― |
3.7.4-complex | slepc-complex/3.7.4_intel-17.0-impi-2017.2 | ― | + |
/opt/app/slepc
/opt/app/slepc-complex
Version | Module File | System A | System B,C |
---|---|---|---|
2.2.0 | smash/2.2.0_intel-17.0 | + | ― |
/opt/app/smash
Version | Module File | SystemA | SystemB,C |
---|---|---|---|
6.7.14 | smokeview/6.7.14_intel-18.0 | ― | + |
/opt/app/smokeview
version | Module File | SystemA | SystemB,C |
---|---|---|---|
6.1 | cray-tpsl/19.06.1 | + | ― |
5.2 | cray-tpsl/18.06.1 | + | ― |
― | cray-tpsl/17.11.1 | + | ― |
― | cray-tpsl/16.12.1 | + | ― |
5.2.1 | superlu/5.2.1 | ― | + |
System A
/opt/cray/pe/tpsl
System B,C
/opt/app/superlu
version | Module File | SystemA | SystemB,C |
---|---|---|---|
12.14.1.0 | cray-trilinos/12.14.1.0 | + | ― |
12.14.0 | trilinos/12.14.0_intel-18.0-impi-2018.3 | ― | + |
12.12.1.1 | cray-trilinos/12.12.1.1 | + | ― |
12.10.1.2 | cray-trilinos/12.10.1.2 | + | ― |
12.10.1.1 | cray-trilinos/12.10.1.1 | + | ― |
12.10.1 | trilinos/12.10.1_intel-17.0-impi-2017.2 | ― | + |
12.8.1.0 | cray-trilinos/12.8.1.0 | + | ― |
12.6.3.3 | cray-trilinos/12.6.3.3 | + | ― |
12.6.3.1 | cray-trilinos/12.6.3.1 | + | ― |
12.2.1.0 | cray-trilinos/12.2.1.0 | + | ― |
System A
/opt/cray/pe/trilinos
System B,C
/opt/app/trilinos
version | Module File | SystemA | SystemB,C |
---|---|---|---|
2.2.8 | udunits/2.2.8_gnu-4.8 udunits/2.2.8_intel-18.0 |
― | + |
/opt/app/udunits
version | Module File | SystemA | SystemB,C |
---|---|---|---|
3.8.1 | wrf/3.8.1_cray-8.5 | + | ― |
" | wrf/3.8.1_intel-16.0 | + | + |
We provide the compiled module file as a sample, because the WRF includes various simulation models. Please copy the sample configuration file depending on the simulation model you use, compile in your own local environment.
The example below shows how to compile in the system A.
$ module switch PrgEnv-cray PrgEnv-intel
$ module load cray-netcdf
$ export NETCDF=/opt/cray/pe/netcdf/4.4.0/intel/150
/opt/app/wrf/3.8.1/intel-16.0/arch/configure_new.defaults
/opt/app/wrf
version | Module File | SystemA | SystemB,C |
---|---|---|---|
3.5.7 | vesta/3.5.7 | ― | + |
/opt/app/vesta
version | Module File | SystemA | SystemB,C |
---|---|---|---|
8.2 | vim/8.2 | + | + |
/opt/app/vim
version | Module File | SystemA | SystemB,C |
---|---|---|---|
2.11.0 | visit/2.11.0 | ― | + |
/opt/app/visit
VTK - The Visualization Toolkit
version | Module File | SystemA | SystemB,C |
---|---|---|---|
8.2.0 | vtk/8.2.0_gnu-6.1 | ― | + |
8.2.0 | vtk/8.2.0_gnu-8.2 | + | ― |
7.1.1 | vtk/7.1.1_intel-18.0 | + | ― |
/opt/app/vtk
Visual output functions using OpenGL are not available in system A.